Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107556120 . C A CCDS5749.1:NM_000108.3:c.854tCa>tAa_NP_000099.2:p.285S>* Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 SER A:271 A:250 136.0 1.0 T -79.9 -22.1 136.0 1.0 0.0
SER B:271 B:250 130.0 1.0 T -79.3 -37.4 130.0 1.0 0.0
SER C:271 C:250 134.0 1.0 T -53.8 -39.5 NA NA NA
SER D:271 D:250 141.0 1.0 T -66.7 -19.8 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 SER A:250 A:250 124.0 1.0 T -33.8 -65.9 124.0 1.0 0.0
SER B:250 B:250 132.0 1.0 T -73.3 -47.4 132.0 1.0 0.0
SER C:250 C:250 132.0 1.0 T -42.4 -42.7 NA NA NA
SER D:250 D:250 128.0 1.0 S -62.6 -33.2 NA NA NA
SER E:250 E:250 134.0 1.0 S -62.0 -35.3 NA NA NA
SER F:250 F:250 133.0 1.0 T -57.3 -45.1 NA NA NA
SER G:250 G:250 135.0 1.0 T -77.7 -19.6 NA NA NA
SER H:250 H:250 135.0 1.0 T -59.0 -43.9 NA NA NA
SER I:250 I:250 127.0 1.0 T -57.3 -33.5 NA NA NA
SER J:250 J:250 134.0 1.0 T -58.0 -31.0 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 SER A:272 A:250 136.0 1.0 T -63.7 -41.3 136.0 1.0 0.0 HOH
 1.777
 HG
 O
SER B:272 B:250 137.0 1.0 T -61.8 -39.4 137.0 1.0 0.0 HOH
 2.363
 H
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:272 A:250 133.0 1.0 T -61.8 -41.2 133.0 1.0 0.0 HOH
 6.308
 N
 O
SER B:272 B:250 137.0 1.0 T -60.9 -35.7 137.0 1.0 0.0 HOH
 2.652
 H
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 SER A:250 A:250 123.0 1.0 T -59.1 -21.8 123.0 1.0 0.0
SER B:250 B:250 141.0 1.0 T -51.7 -22.1 141.0 1.0 0.0 HOH
 2.670
 N
 O
SER C:250 C:250 140.0 1.0 T -55.7 -18.6 NA NA NA
SER D:250 D:250 134.0 1.0 T -67.5 -17.8 NA NA NA
SER E:250 E:250 138.0 1.0 T -65.3 -17.6 NA NA NA
SER F:250 F:250 139.0 1.0 T -54.3 -23.0 NA NA NA
SER G:250 G:250 135.0 1.0 T -45.9 -57.7 NA NA NA
SER H:250 H:250 134.0 1.0 T -57.3 -23.5 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 SER A:250 A:250 137.0 1.0 T -64.4 -22.4 137.0 1.0 0.0 HOH
 8.652
 O
 O
SER B:250 B:250 140.0 1.0 T -54.6 -22.5 140.0 1.0 0.0 HOH
 2.721
 N
 O
SER C:250 C:250 139.0 1.0 T -57.0 -24.9 NA NA NA
SER D:250 D:250 140.0 1.0 T -67.6 -28.9 NA NA NA
SER E:250 E:250 143.0 1.0 T -56.7 -17.7 NA NA NA
SER F:250 F:250 137.0 1.0 T -56.2 -31.8 NA NA NA
SER G:250 G:250 133.0 1.0 T -50.6 -58.8 NA NA NA
SER H:250 H:250 140.0 1.0 T -50.7 -23.6 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 SER A:250 A:250 133.0 1.0 T -54.4 -34.3 133.0 1.0 0.0 HOH
 2.517
 OG
 O
SER B:250 B:250 130.0 1.0 T -48.8 -42.1 130.0 1.0 0.0 HOH
 2.593
 OG
 O
SER C:250 C:250 142.0 1.0 T -58.2 -14.2 NA NA NA
SER D:250 D:250 138.0 1.0 T -52.9 -33.5 NA NA NA
SER E:250 E:250 130.0 1.0 T -56.2 -39.9 NA NA NA
SER F:250 F:250 138.0 1.0 T -57.5 -27.9 NA NA NA
SER G:250 G:250 134.0 1.0 T -56.5 -32.9 NA NA NA
SER H:250 H:250 135.0 1.0 T -50.7 -36.0 NA NA NA
SER I:250 I:250 131.0 1.0 T -59.4 -16.6 NA NA NA
SER J:250 J:250 142.0 1.0 S -64.8 -32.8 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 SER A:271 A:250 137.0 1.0 T -61.3 -40.3 137.0 1.0 0.0
SER B:271 B:250 135.0 1.0 T -60.4 -38.1 135.0 1.0 0.0 HOH
 2.056
 HG
 O
SER C:271 C:250 135.0 1.0 T -61.5 -34.7 NA NA NA
SER D:271 D:250 136.0 1.0 T -63.2 -38.9 NA NA NA
SER E:271 E:250 134.0 1.0 T -60.7 -41.8 NA NA NA
SER F:271 F:250 138.0 1.0 T -60.6 -41.3 NA NA NA
SER G:271 G:250 137.0 1.0 T -59.6 -38.6 NA NA NA
SER H:271 H:250 136.0 1.0 T -61.5 -37.4 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:272 A:250 133.0 1.0 T -64.6 -45.6 133.0 1.0 0.0 HOH
 6.163
 N
 O
SER B:272 B:250 134.0 1.0 T -62.6 -43.4 134.0 1.0 0.0 HOH
 1.938
 HG
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 SER A:272 A:250 137.0 1.0 T -62.9 -40.4 137.0 1.0 0.0 HOH
 2.593
 OG
 O
SER B:272 B:250 135.0 1.0 T -60.1 -35.5 135.0 1.0 0.0 HOH
 7.127
 C
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 SER A:272 A:250 141.0 1.0 T -62.3 -38.6 141.0 1.0 0.0 TRS
HOH
 3.412
2.613
 N
OG
 O3
O
SER B:272 B:250 141.0 1.0 T -70.1 -18.5 141.0 1.0 0.0 HOH
 2.668
 O
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:272 A:250 140.0 1.0 T -64.9 -30.1 140.0 1.0 0.0 HOH
 1.844
 HG
 O
SER B:272 B:250 139.0 1.0 T -64.2 -25.2 139.0 1.0 0.0 HOH
 6.056
 HB2
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:272 A:250 140.0 1.0 T -62.4 -33.9 140.0 1.0 0.0 HOH
 6.106
 N
 O
SER B:272 B:250 139.0 1.0 T -61.1 -31.1 139.0 1.0 0.0 HOH
 2.931
 HG
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:272 A:250 141.0 1.0 T -62.2 -31.1 141.0 1.0 0.0 HOH
 1.765
 HG
 O
SER B:272 B:250 139.0 1.0 T -64.1 -25.3 139.0 1.0 0.0 HOH
 2.817
 O
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:272 A:250 137.0 1.0 T -63.1 -31.2 137.0 1.0 0.0
SER B:272 B:250 136.0 1.0 T -66.6 -34.5 136.0 1.0 0.0
SER C:272 C:250 135.0 1.0 T -63.3 -31.5 NA NA NA
SER D:272 D:250 132.0 1.0 S -64.1 -31.3 NA NA NA
SER E:272 E:250 108.0 0.939 T -62.2 -36.7 NA NA NA
SER F:272 F:250 139.0 1.0 T -63.9 -35.9 NA NA NA
SER G:272 G:250 121.0 1.0 T -63.2 -31.2 NA NA NA
SER H:272 H:250 132.0 1.0 T -61.5 -25.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 SER A:285 A:285 138.0 1.0 T -65.3 -19.9