Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557274 . T A CCDS5749.1:NM_000108.3:c.911aTc>aAc_NP_000099.2:p.304I>N Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 ILE A:290 A:269 25.0 0.143 E -110.9 148.2 25.0 0.143 0.0 HOH
 7.127
 CG2
 O
ILE B:290 B:269 27.0 0.154 E -121.8 142.7 27.0 0.154 0.0 HOH
 5.784
 CD1
 O
ILE C:290 C:269 17.0 0.097 E -120.8 140.4 NA NA NA
ILE D:290 D:269 29.0 0.166 E -112.0 125.9 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 ILE A:269 A:269 25.0 0.143 E -88.2 148.4 25.0 0.143 0.0 HOH
 7.501
 CG1
 O
ILE B:269 B:269 22.0 0.126 E -134.4 114.3 22.0 0.126 0.0 HOH
 5.358
 CG2
 O
ILE C:269 C:269 14.0 0.08 E -104.1 141.0 NA NA NA
ILE D:269 D:269 21.0 0.12 E -104.6 142.7 NA NA NA
ILE E:269 E:269 15.0 0.086 E -110.0 129.0 NA NA NA
ILE F:269 F:269 13.0 0.074 E -112.6 137.5 NA NA NA
ILE G:269 G:269 18.0 0.103 E -113.3 143.0 NA NA NA
ILE H:269 H:269 28.0 0.16 E -108.4 143.3 NA NA NA
ILE I:269 I:269 18.0 0.103 E -113.2 127.9 NA NA NA
ILE J:269 J:269 24.0 0.137 E -132.3 122.0 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 20.0 0.114 E -133.1 145.4 20.0 0.114 0.0 HOH
 2.614
 HA
 O
ILE B:291 B:269 27.0 0.154 E -130.7 143.2 27.0 0.154 0.0 HOH
 2.993
 HA
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 27.0 0.154 E -123.0 143.2 27.0 0.154 0.0
ILE B:291 B:269 22.0 0.126 E -121.8 141.6 22.0 0.126 0.0 HOH
 7.308
 HG21
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ILE A:269 A:269 27.0 0.154 E -138.4 160.2 27.0 0.154 0.0 NAD
HOH
 9.770
7.227
 CD1
CG2
 N1A
O
ILE B:269 B:269 20.0 0.114 E -118.2 132.9 20.0 0.114 0.0 HOH
 3.571
 CA
 O
ILE C:269 C:269 19.0 0.109 E -117.9 140.9 NA NA NA
ILE D:269 D:269 25.0 0.143 E -128.1 153.2 NA NA NA
ILE E:269 E:269 25.0 0.143 E -114.2 140.8 NA NA NA
ILE F:269 F:269 31.0 0.177 E -128.5 143.9 NA NA NA
ILE G:269 G:269 33.0 0.189 E -140.8 140.6 NA NA NA
ILE H:269 H:269 22.0 0.126 E -117.3 138.3 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ILE A:269 A:269 29.0 0.166 E -128.4 160.3 29.0 0.166 0.0 HOH
 9.120
 C
 O
ILE B:269 B:269 19.0 0.109 E -115.2 129.1 19.0 0.109 0.0 HOH
 5.220
 CG2
 O
ILE C:269 C:269 20.0 0.114 E -118.9 133.4 NA NA NA
ILE D:269 D:269 20.0 0.114 E -123.2 152.9 NA NA NA
ILE E:269 E:269 21.0 0.12 E -114.6 134.1 NA NA NA
ILE F:269 F:269 30.0 0.171 E -130.5 150.3 NA NA NA
ILE G:269 G:269 29.0 0.166 E -132.0 152.3 NA NA NA
ILE H:269 H:269 18.0 0.103 E -116.6 131.0 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 ILE A:269 A:269 21.0 0.12 E -131.3 127.8 21.0 0.12 0.0 HOH
 3.306
 CA
 O
ILE B:269 B:269 19.0 0.109 E -122.5 129.9 19.0 0.109 0.0 HOH
 3.609
 CA
 O
ILE C:269 C:269 34.0 0.194 E -116.7 141.3 NA NA NA
ILE D:269 D:269 27.0 0.154 E -105.8 144.3 NA NA NA
ILE E:269 E:269 27.0 0.154 E -127.3 134.6 NA NA NA
ILE F:269 F:269 14.0 0.08 E -114.3 140.8 NA NA NA
ILE G:269 G:269 20.0 0.114 E -112.3 132.7 NA NA NA
ILE H:269 H:269 16.0 0.091 E -118.0 129.6 NA NA NA
ILE I:269 I:269 14.0 0.08 E -119.3 129.5 NA NA NA
ILE J:269 J:269 24.0 0.137 E -107.5 145.8 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 ILE A:290 A:269 21.0 0.12 E -134.3 150.5 21.0 0.12 0.0 HOH
 2.841
 HG22
 O
ILE B:290 B:269 26.0 0.149 E -132.0 144.4 26.0 0.149 0.0 HOH
 4.929
 HG21
 O
ILE C:290 C:269 19.0 0.109 E -133.0 149.9 NA NA NA
ILE D:290 D:269 21.0 0.12 E -130.0 141.3 NA NA NA
ILE E:290 E:269 30.0 0.171 E -131.6 147.5 NA NA NA
ILE F:290 F:269 32.0 0.183 E -133.7 149.1 NA NA NA
ILE G:290 G:269 26.0 0.149 E -137.2 149.8 NA NA NA
ILE H:290 H:269 22.0 0.126 E -128.6 148.0 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 35.0 0.2 E -122.7 132.6 35.0 0.2 0.0
ILE B:291 B:269 29.0 0.166 E -121.7 130.6 29.0 0.166 0.0 HOH
 8.983
 HG23
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 ILE A:291 A:269 22.0 0.126 E -126.3 132.7 22.0 0.126 0.0 HOH
 3.482
 CA
 O
ILE B:291 B:269 30.0 0.171 E -122.8 149.2 30.0 0.171 0.0 HOH
 8.694
 C
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 ILE A:291 A:269 20.0 0.114 E -127.0 135.8 20.0 0.114 0.0 HOH
 3.118
 CG2
 O
ILE B:291 B:269 26.0 0.149 E -126.6 146.9 26.0 0.149 0.0 HOH
 3.607
 CA
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 20.0 0.114 E -119.9 142.2 20.0 0.114 0.0 HOH
 2.909
 HA
 O
ILE B:291 B:269 28.0 0.16 E -119.2 142.3 28.0 0.16 0.0 HOH
 2.952
 HA
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 23.0 0.131 E -130.5 139.6 23.0 0.131 0.0 HOH
 2.838
 HA
 O
ILE B:291 B:269 23.0 0.131 E -130.0 136.9 23.0 0.131 0.0 HOH
 6.896
 H
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 22.0 0.126 E -119.9 148.3 22.0 0.126 0.0 HOH
 2.855
 HA
 O
ILE B:291 B:269 28.0 0.16 E -118.1 150.6 28.0 0.16 0.0 HOH
 3.135
 HB
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ILE A:291 A:269 25.0 0.143 E -123.0 144.8 25.0 0.143 0.0 HOH
 4.800
 HG21
 O
ILE B:291 B:269 36.0 0.206 E -115.0 141.7 36.0 0.206 0.0
ILE C:291 C:269 27.0 0.154 E -120.5 148.2 NA NA NA
ILE D:291 D:269 32.0 0.183 E -118.7 148.4 NA NA NA
ILE E:291 E:269 43.0 0.246 E -119.2 140.8 NA NA NA
ILE F:291 F:269 28.0 0.16 E -113.9 138.4 NA NA NA
ILE G:291 G:269 33.0 0.189 E -118.3 141.3 NA NA NA
ILE H:291 H:269 19.0 0.109 E -118.4 143.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 ILE A:304 A:304 10.0 0.057 E -109.3 119.6