Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557346 . G A CCDS5749.1:NM_000108.3:c.983gGa>gAa_NP_000099.2:p.328G>E Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLY A:314 A:293 29.0 0.387 T 73.7 16.1 29.0 0.387 0.0 HOH
 6.813
 O
 O
GLY B:314 B:293 35.0 0.467 T 96.0 27.4 35.0 0.467 0.0
GLY C:314 C:293 33.0 0.44 T 61.3 38.3 NA NA NA
GLY D:314 D:293 38.0 0.507 T 81.8 16.6 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLY A:293 A:293 43.0 0.573 T 77.0 24.9 43.0 0.573 0.0 HOH
 9.997
 O
 O
GLY B:293 B:293 49.0 0.653 T 71.0 23.5 49.0 0.653 0.0 HOH
 4.817
 O
 O
GLY C:293 C:293 44.0 0.587 T 80.5 2.2 NA NA NA
GLY D:293 D:293 48.0 0.64 T 73.0 12.6 NA NA NA
GLY E:293 E:293 35.0 0.467 T 105.4 38.1 NA NA NA
GLY F:293 F:293 49.0 0.653 T 69.8 31.3 NA NA NA
GLY G:293 G:293 39.0 0.52 T 102.9 3.9 NA NA NA
GLY H:293 H:293 41.0 0.547 T 87.3 12.6 NA NA NA
GLY I:293 I:293 65.0 0.867 S 42.2 27.8 NA NA NA
GLY J:293 J:293 51.0 0.68 T 82.0 13.8 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 31.0 0.413 T 89.2 11.7 31.0 0.413 0.0 SO4
HOH
 7.053
4.712
 H
O
 O1
O
GLY B:315 B:293 32.0 0.427 T 87.7 11.6 32.0 0.427 0.0 SO4
HOH
 7.099
5.243
 H
O
 O4
O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 29.0 0.387 T 83.2 13.7 29.0 0.387 0.0 SO4
HOH
 7.065
4.640
 H
O
 O1
O
GLY B:315 B:293 24.0 0.32 T 82.0 13.6 24.0 0.32 0.0 SO4
HOH
 6.913
4.841
 H
O
 O3
O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLY A:293 A:293 25.0 0.333 T 103.1 12.2 25.0 0.333 0.0 SO4
HOH
 7.965
5.912
 N
C
 O1
O
GLY B:293 B:293 39.0 0.52 T 101.7 2.7 39.0 0.52 0.0
GLY C:293 C:293 44.0 0.587 T 105.5 29.8 NA NA NA
GLY D:293 D:293 25.0 0.333 T 101.9 8.4 NA NA NA
GLY E:293 E:293 42.0 0.56 T 98.9 16.7 NA NA NA
GLY F:293 F:293 30.0 0.4 T 89.2 20.5 NA NA NA
GLY G:293 G:293 31.0 0.413 T 93.0 20.2 NA NA NA
GLY H:293 H:293 45.0 0.6 T 99.1 9.7 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLY A:293 A:293 27.0 0.36 T 89.1 14.7 27.0 0.36 0.0 SO4
HOH
 7.830
4.934
 N
O
 O1
O
GLY B:293 B:293 39.0 0.52 T 103.4 -1.7 39.0 0.52 0.0 SO4
 8.014
 N
 O4
GLY C:293 C:293 40.0 0.533 T 97.0 9.0 NA NA NA
GLY D:293 D:293 27.0 0.36 T 92.5 12.1 NA NA NA
GLY E:293 E:293 39.0 0.52 T 108.8 0.3 NA NA NA
GLY F:293 F:293 31.0 0.413 T 87.9 16.2 NA NA NA
GLY G:293 G:293 27.0 0.36 T 89.6 17.8 NA NA NA
GLY H:293 H:293 39.0 0.52 T 90.7 9.5 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLY A:293 A:293 31.0 0.413 T 80.8 15.6 31.0 0.413 0.0 SO4
HOH
 7.273
4.674
 N
O
 O1
O
GLY B:293 B:293 28.0 0.373 T 92.5 15.9 28.0 0.373 0.0 SO4
 7.575
 N
 O1
GLY C:293 C:293 19.0 0.253 T 87.3 9.5 NA NA NA
GLY D:293 D:293 36.0 0.48 T 91.8 9.5 NA NA NA
GLY E:293 E:293 45.0 0.6 T 88.9 11.7 NA NA NA
GLY F:293 F:293 36.0 0.48 T 90.0 7.7 NA NA NA
GLY G:293 G:293 35.0 0.467 T 87.5 33.2 NA NA NA
GLY H:293 H:293 27.0 0.36 T 85.6 13.1 NA NA NA
GLY I:293 I:293 35.0 0.467 T 100.1 7.8 NA NA NA
GLY J:293 J:293 30.0 0.4 T 86.6 15.4 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLY A:314 A:293 44.0 0.587 T 81.7 15.6 44.0 0.587 0.0 HOH
 5.179
 O
 O
GLY B:314 B:293 27.0 0.36 T 83.4 12.9 27.0 0.36 0.0 HOH
 4.604
 O
 O
GLY C:314 C:293 32.0 0.427 T 84.3 16.3 NA NA NA
GLY D:314 D:293 51.0 0.68 T 85.2 17.2 NA NA NA
GLY E:314 E:293 41.0 0.547 T 84.6 15.1 NA NA NA
GLY F:314 F:293 31.0 0.413 T 84.1 14.9 NA NA NA
GLY G:314 G:293 40.0 0.533 T 86.3 16.7 NA NA NA
GLY H:314 H:293 49.0 0.653 T 85.3 13.9 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 33.0 0.44 T 85.0 13.3 33.0 0.44 0.0 SO4
HOH
 6.949
4.794
 H
O
 O2
O
GLY B:315 B:293 29.0 0.387 T 84.0 12.6 29.0 0.387 0.0 SO4
HOH
 6.599
5.083
 H
O
 O3
O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLY A:315 A:293 30.0 0.4 T 88.4 13.1 30.0 0.4 0.0 GOL
HOH
 7.351
3.535
 N
CA
 O3
O
GLY B:315 B:293 32.0 0.427 T 70.0 44.9 32.0 0.427 0.0 HOH
 5.266
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLY A:315 A:293 34.0 0.453 T 85.8 15.6 34.0 0.453 0.0 SO4
HOH
 7.688
3.702
 N
CA
 O2
O
GLY B:315 B:293 29.0 0.387 T 84.3 15.2 29.0 0.387 0.0 SO4
HOH
 7.682
3.470
 N
CA
 O4
O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 32.0 0.427 T 86.9 14.3 32.0 0.427 0.0 SO4
HOH
 7.103
2.642
 H
O
 O1
O
GLY B:315 B:293 31.0 0.413 T 85.9 14.8 31.0 0.413 0.0 SO4
HOH
 7.052
4.987
 H
O
 O3
O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 32.0 0.427 T 85.3 14.7 32.0 0.427 0.0 SO4
HOH
 6.994
4.659
 H
O
 O1
O
GLY B:315 B:293 31.0 0.413 T 85.1 14.2 31.0 0.413 0.0 SO4
HOH
 6.960
4.869
 H
O
 O3
O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 29.0 0.387 T 86.9 14.2 29.0 0.387 0.0 SO4
HOH
 7.036
4.943
 H
O
 O1
O
GLY B:315 B:293 31.0 0.413 T 84.6 12.5 31.0 0.413 0.0 SO4
HOH
 6.751
4.975
 H
O
 O3
O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:315 A:293 35.0 0.467 T 91.1 11.6 35.0 0.467 0.0 SO4
HOH
 7.200
4.680
 H
O
 O3
O
GLY B:315 B:293 43.0 0.573 T 90.8 12.0 43.0 0.573 0.0 HOH
 6.668
 O
 O
GLY C:315 C:293 38.0 0.507 T 91.1 11.8 NA NA NA
GLY D:315 D:293 38.0 0.507 T 93.2 10.9 NA NA NA
GLY E:315 E:293 37.0 0.493 T 92.9 13.8 NA NA NA
GLY F:315 F:293 39.0 0.52 T 95.9 15.2 NA NA NA
GLY G:315 G:293 35.0 0.467 T 93.1 12.3 NA NA NA
GLY H:315 H:293 29.0 0.387 T 93.8 14.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLY A:328 A:328 31.0 0.413 T 68.5 21.9