Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557351 . G A CCDS5749.1:NM_000108.3:c.988Gaa>Aaa_NP_000099.2:p.330E>K Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLU A:316 A:295 130.0 0.684 -90.7 152.3 130.0 0.684 0.0 HOH
 4.949
 O
 O
GLU B:316 B:295 139.0 0.732 -92.7 134.0 139.0 0.732 0.0
GLU C:316 C:295 148.0 0.779 -92.6 142.7 NA NA NA
GLU D:316 D:295 139.0 0.732 -81.5 151.9 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLU A:295 A:295 149.0 0.784 -79.1 148.2 149.0 0.784 0.0 HOH
 8.342
 O
 O
GLU B:295 B:295 147.0 0.774 -72.2 146.4 147.0 0.774 0.0 HOH
 2.957
 O
 O
GLU C:295 C:295 142.0 0.747 -91.7 142.7 NA NA NA
GLU D:295 D:295 156.0 0.821 -111.1 130.9 NA NA NA
GLU E:295 E:295 136.0 0.716 -91.9 150.1 NA NA NA
GLU F:295 F:295 154.0 0.811 -74.7 144.6 NA NA NA
GLU G:295 G:295 144.0 0.758 -83.2 140.3 NA NA NA
GLU H:295 H:295 152.0 0.8 -71.5 145.4 NA NA NA
GLU I:295 I:295 126.0 0.663 -67.4 -172.9 NA NA NA
GLU J:295 J:295 153.0 0.805 -109.6 121.9 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 141.0 0.742 -87.9 149.4 141.0 0.742 0.0 SO4
HOH
 7.478
2.520
 HA
H
 O1
O
GLU B:317 B:295 145.0 0.763 -88.3 147.5 145.0 0.763 0.0 SO4
HOH
 7.512
2.629
 HA
HA
 O4
O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 153.0 0.805 -83.8 147.7 153.0 0.805 0.0 SO4
HOH
 7.538
2.537
 HA
H
 O1
O
GLU B:317 B:295 158.0 0.832 -83.1 145.0 158.0 0.832 0.0 SO4
HOH
 7.556
2.681
 HA
O
 O3
O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLU A:295 A:295 146.0 0.768 -81.3 142.8 146.0 0.768 0.0 SO4
HOH
 8.219
3.833
 CA
CA
 O1
O
GLU B:295 B:295 145.0 0.763 -84.7 129.7 145.0 0.763 0.0 HOH
 8.768
 C
 O
GLU C:295 C:295 141.0 0.742 -83.6 133.0 NA NA NA
GLU D:295 D:295 148.0 0.779 -78.6 139.9 NA NA NA
GLU E:295 E:295 134.0 0.705 -79.8 146.8 NA NA NA
GLU F:295 F:295 144.0 0.758 -77.3 142.0 NA NA NA
GLU G:295 G:295 149.0 0.784 -77.4 145.7 NA NA NA
GLU H:295 H:295 138.0 0.726 -79.2 143.3 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLU A:295 A:295 143.0 0.753 -90.5 142.3 143.0 0.753 0.0 SO4
HOH
 8.268
2.657
 CA
O
 O1
O
GLU B:295 B:295 152.0 0.8 -90.4 130.1 152.0 0.8 0.0 SO4
HOH
 8.534
7.899
 CA
O
 O2
O
GLU C:295 C:295 137.0 0.721 -93.6 144.4 NA NA NA
GLU D:295 D:295 139.0 0.732 -93.5 141.9 NA NA NA
GLU E:295 E:295 148.0 0.779 -98.2 133.9 NA NA NA
GLU F:295 F:295 150.0 0.789 -86.3 139.9 NA NA NA
GLU G:295 G:295 147.0 0.774 -83.0 142.3 NA NA NA
GLU H:295 H:295 146.0 0.768 -80.5 137.2 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLU A:295 A:295 135.0 0.711 -100.9 138.1 135.0 0.711 0.0 SO4
HOH
 8.868
2.981
 N
O
 O1
O
GLU B:295 B:295 145.0 0.763 -89.5 113.1 145.0 0.763 0.0 SO4
HOH
 8.212
8.543
 N
C
 O1
O
GLU C:295 C:295 121.0 0.637 -88.2 146.4 NA NA NA
GLU D:295 D:295 121.0 0.637 -77.7 143.4 NA NA NA
GLU E:295 E:295 156.0 0.821 -92.9 136.5 NA NA NA
GLU F:295 F:295 121.0 0.637 -82.9 143.9 NA NA NA
GLU G:295 G:295 165.0 0.868 -93.0 140.4 NA NA NA
GLU H:295 H:295 157.0 0.826 -84.8 147.0 NA NA NA
GLU I:295 I:295 144.0 0.758 -100.1 150.0 NA NA NA
GLU J:295 J:295 153.0 0.805 -78.9 143.0 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLU A:316 A:295 160.0 0.842 -95.2 131.6 160.0 0.842 0.0 HOH
 2.667
 H
 O
GLU B:316 B:295 145.0 0.763 -101.5 137.7 145.0 0.763 0.0 HOH
 2.513
 H
 O
GLU C:316 C:295 153.0 0.805 -95.8 130.9 NA NA NA
GLU D:316 D:295 170.0 0.895 -92.1 131.5 NA NA NA
GLU E:316 E:295 161.0 0.847 -96.8 131.4 NA NA NA
GLU F:316 F:295 144.0 0.758 -98.7 133.9 NA NA NA
GLU G:316 G:295 143.0 0.753 -98.8 132.9 NA NA NA
GLU H:316 H:295 142.0 0.747 -94.7 133.3 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 152.0 0.8 -86.7 144.5 152.0 0.8 0.0 SO4
HOH
 7.554
2.545
 HA
H
 O2
O
GLU B:317 B:295 162.0 0.853 -85.4 143.0 162.0 0.853 0.0 SO4
HOH
 7.731
2.479
 HA
O
 O3
O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLU A:317 A:295 146.0 0.768 -88.7 144.1 146.0 0.768 0.0 GOL
HOH
 8.040
2.671
 N
O
 O3
O
GLU B:317 B:295 152.0 0.8 -85.7 141.8 152.0 0.8 0.0 HOH
 2.572
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLU A:317 A:295 140.0 0.737 -85.7 152.3 140.0 0.737 0.0 SO4
HOH
 8.345
2.729
 CA
O
 O2
O
GLU B:317 B:295 153.0 0.805 -86.4 141.8 153.0 0.805 0.0 SO4
HOH
 8.411
2.674
 N
O
 O4
O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 153.0 0.805 -86.1 151.3 153.0 0.805 0.0 SO4
HOH
 7.585
2.626
 HA
H
 O1
O
GLU B:317 B:295 155.0 0.816 -86.0 148.4 155.0 0.816 0.0 SO4
HOH
 7.616
2.662
 HA
O
 O3
O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 147.0 0.774 -86.2 148.3 147.0 0.774 0.0 SO4
HOH
 7.560
2.500
 HA
H
 O1
O
GLU B:317 B:295 145.0 0.763 -86.1 146.6 145.0 0.763 0.0 SO4
HOH
 7.557
2.712
 HA
H
 O3
O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 149.0 0.784 -84.1 149.4 149.0 0.784 0.0 SO4
HOH
 7.516
2.693
 HA
O
 O1
O
GLU B:317 B:295 143.0 0.753 -83.5 144.2 143.0 0.753 0.0 SO4
HOH
 7.468
2.775
 HA
HA
 O3
O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:317 A:295 165.0 0.868 -80.9 143.0 165.0 0.868 0.0 SO4
HOH
 7.564
2.618
 HA
H
 O3
O
GLU B:317 B:295 141.0 0.742 -80.2 143.8 141.0 0.742 0.0 HOH
 5.479
 O
 O
GLU C:317 C:295 150.0 0.789 -81.1 145.6 NA NA NA
GLU D:317 D:295 136.0 0.716 -80.1 144.9 NA NA NA
GLU E:317 E:295 144.0 0.758 -77.5 140.2 NA NA NA
GLU F:317 F:295 158.0 0.832 -80.3 140.5 NA NA NA
GLU G:317 G:295 161.0 0.847 -78.0 146.8 NA NA NA
GLU H:317 H:295 148.0 0.779 -80.3 145.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLU A:330 A:330 148.0 0.779 -73.3 145.0