Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557399 . A C CCDS5749.1:NM_000108.3:c.1036Aaa>Caa_NP_000099.2:p.346K>Q Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 LYS A:332 A:311 155.0 0.775 S -50.3 -23.0 155.0 0.775 0.0 HOH
 2.690
 N
 O
LYS B:332 B:311 174.0 0.87 S -55.3 -35.7 174.0 0.87 0.0
LYS C:332 C:311 153.0 0.765 S -53.3 -36.2 NA NA NA
LYS D:332 D:311 122.0 0.61 S -51.0 -50.8 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 LYS A:311 A:311 169.0 0.845 S -56.4 -33.9 169.0 0.845 0.0 HOH
 4.105
 CD
 O
LYS B:311 B:311 181.0 0.905 S -57.9 -25.3 181.0 0.905 0.0 HOH
 3.567
 CG
 O
LYS C:311 C:311 165.0 0.825 S -49.2 -41.9 NA NA NA
LYS D:311 D:311 147.0 0.735 S -43.6 -38.4 NA NA NA
LYS E:311 E:311 181.0 0.905 S -65.4 -29.3 NA NA NA
LYS F:311 F:311 188.0 0.94 S -49.2 -43.0 NA NA NA
LYS G:311 G:311 149.0 0.745 S -71.2 -10.4 NA NA NA
LYS H:311 H:311 179.0 0.895 S -42.0 -33.2 NA NA NA
LYS I:311 I:311 161.0 0.805 S -62.3 -5.6 NA NA NA
LYS J:311 J:311 172.0 0.86 S -65.3 -29.6 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 138.0 0.69 S -63.1 -18.1 138.0 0.69 0.0 SO4
HOH
 8.077
1.932
 O
H
 O1
O
LYS B:333 B:311 119.0 0.595 S -61.7 -19.8 119.0 0.595 0.0 HOH
 2.252
 H
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 152.0 0.76 S -59.6 -22.0 152.0 0.76 0.0 HOH
 2.084
 H
 O
LYS B:333 B:311 135.0 0.675 S -60.2 -26.8 135.0 0.675 0.0 HOH
 2.128
 H
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 LYS A:311 A:311 149.0 0.745 S -55.3 -31.0 149.0 0.745 0.0 HOH
 2.765
 N
 O
LYS B:311 B:311 153.0 0.765 S -63.3 -46.5 153.0 0.765 0.0
LYS C:311 C:311 148.0 0.74 S -64.9 -33.9 NA NA NA
LYS D:311 D:311 148.0 0.74 S -54.7 -32.7 NA NA NA
LYS E:311 E:311 157.0 0.785 S -62.7 -9.8 NA NA NA
LYS F:311 F:311 145.0 0.725 S -53.0 -38.4 NA NA NA
LYS G:311 G:311 154.0 0.77 S -52.4 -36.1 NA NA NA
LYS H:311 H:311 145.0 0.725 S -60.4 -28.5 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 LYS A:311 A:311 144.0 0.72 S -54.4 -34.1 144.0 0.72 0.0 HOH
 2.809
 N
 O
LYS B:311 B:311 150.0 0.75 S -62.8 -45.2 150.0 0.75 0.0
LYS C:311 C:311 150.0 0.75 S -67.7 -31.6 NA NA NA
LYS D:311 D:311 146.0 0.73 S -53.8 -28.0 NA NA NA
LYS E:311 E:311 149.0 0.745 S -59.7 -26.5 NA NA NA
LYS F:311 F:311 144.0 0.72 S -52.3 -27.2 NA NA NA
LYS G:311 G:311 149.0 0.745 S -51.7 -34.3 NA NA NA
LYS H:311 H:311 144.0 0.72 S -57.1 -27.9 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 LYS A:311 A:311 145.0 0.725 S -55.5 -50.1 145.0 0.725 0.0 HOH
 3.262
 CD
 O
LYS B:311 B:311 128.0 0.64 S -72.3 -56.6 128.0 0.64 0.0
LYS C:311 C:311 152.0 0.76 S -58.0 -33.0 NA NA NA
LYS D:311 D:311 152.0 0.76 S -66.6 -15.2 NA NA NA
LYS E:311 E:311 175.0 0.875 S -62.2 -20.8 NA NA NA
LYS F:311 F:311 129.0 0.645 S -55.9 -21.6 NA NA NA
LYS G:311 G:311 169.0 0.845 S -54.0 -37.5 NA NA NA
LYS H:311 H:311 146.0 0.73 S -65.1 -21.6 NA NA NA
LYS I:311 I:311 122.0 0.61 S -54.8 -31.3 NA NA NA
LYS J:311 J:311 135.0 0.675 S -62.9 -13.9 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 LYS A:332 A:311 174.0 0.87 S -58.4 -30.7 174.0 0.87 0.0 HOH
 3.520
 HD2
 O
LYS B:332 B:311 139.0 0.695 S -54.1 -34.9 139.0 0.695 0.0 HOH
 2.662
 HD3
 O
LYS C:332 C:311 130.0 0.65 S -54.4 -34.2 NA NA NA
LYS D:332 D:311 163.0 0.815 S -59.4 -31.3 NA NA NA
LYS E:332 E:311 179.0 0.895 S -57.7 -28.1 NA NA NA
LYS F:332 F:311 125.0 0.625 S -56.5 -31.5 NA NA NA
LYS G:332 G:311 115.0 0.575 S -55.7 -32.5 NA NA NA
LYS H:332 H:311 148.0 0.74 S -60.4 -24.2 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 152.0 0.76 S -63.5 -18.9 152.0 0.76 0.0 HOH
 2.255
 H
 O
LYS B:333 B:311 156.0 0.78 S -65.2 -19.5 156.0 0.78 0.0 HOH
 3.625
 HD2
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 LYS A:333 A:311 137.0 0.685 S -56.7 -19.5 137.0 0.685 0.0 HOH
 2.847
 N
 O
LYS B:333 B:311 154.0 0.77 S -61.7 -19.5 154.0 0.77 0.0 HOH
 2.887
 N
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 LYS A:333 A:311 144.0 0.72 S -45.8 -32.4 144.0 0.72 0.0 SO4
HOH
 7.633
3.012
 O
N
 O2
O
LYS B:333 B:311 153.0 0.765 S -61.2 -18.6 153.0 0.765 0.0 HOH
 2.998
 N
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 152.0 0.76 S -63.3 -18.8 152.0 0.76 0.0 HOH
 1.689
 HZ3
 O
LYS B:333 B:311 149.0 0.745 S -63.2 -17.9 149.0 0.745 0.0 HOH
 2.181
 H
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 146.0 0.73 S -59.1 -19.5 146.0 0.73 0.0 SO4
HOH
 7.647
2.145
 O
H
 O1
O
LYS B:333 B:311 149.0 0.745 S -56.8 -20.6 149.0 0.745 0.0 HOH
 2.182
 H
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 143.0 0.715 S -62.5 -18.5 143.0 0.715 0.0 HOH
 2.335
 H
 O
LYS B:333 B:311 138.0 0.69 S -64.6 -16.1 138.0 0.69 0.0 HOH
 2.224
 H
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 LYS A:333 A:311 145.0 0.725 S -57.1 -28.8 145.0 0.725 0.0 HOH
 1.858
 H
 O
LYS B:333 B:311 173.0 0.865 S -59.8 -29.4 173.0 0.865 0.0 HOH
 2.008
 H
 O
LYS C:333 C:311 151.0 0.755 S -55.1 -34.6 NA NA NA
LYS D:333 D:311 134.0 0.67 S -58.6 -32.5 NA NA NA
LYS E:333 E:311 139.0 0.695 S -58.4 -29.5 NA NA NA
LYS F:333 F:311 177.0 0.885 S -59.3 -32.6 NA NA NA
LYS G:333 G:311 163.0 0.815 S -58.1 -29.4 NA NA NA
LYS H:333 H:311 127.0 0.635 S -56.1 -30.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 LYS A:346 A:346 138.0 0.69 S -59.6 -19.1