Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557885 . C A CCDS5749.1:NM_000108.3:c.1214tCa>tAa_NP_000099.2:p.405S>* Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 SER A:391 A:370 3.0 0.026 -81.8 165.6 3.0 0.026 0.0 HOH
 2.987
 OG
 O
SER B:391 B:370 5.0 0.043 -69.5 173.3 5.0 0.043 0.0 HOH
 5.521
 CB
 O
SER C:391 C:370 4.0 0.035 -88.6 168.8 NA NA NA
SER D:391 D:370 3.0 0.026 -86.0 -178.9 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 SER A:370 A:370 2.0 0.017 -94.5 175.3 2.0 0.017 0.0 HOH
 8.337
 N
 O
SER B:370 B:370 3.0 0.026 -98.9 169.8 3.0 0.026 0.0 HOH
 5.496
 CB
 O
SER C:370 C:370 3.0 0.026 -86.4 167.8 NA NA NA
SER D:370 D:370 1.0 0.009 -88.4 167.5 NA NA NA
SER E:370 E:370 3.0 0.026 -97.6 162.8 NA NA NA
SER F:370 F:370 4.0 0.035 -77.7 160.0 NA NA NA
SER G:370 G:370 4.0 0.035 -106.6 163.5 NA NA NA
SER H:370 H:370 1.0 0.009 -92.7 169.5 NA NA NA
SER I:370 I:370 2.0 0.017 -74.6 151.0 NA NA NA
SER J:370 J:370 2.0 0.017 -93.1 172.3 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 SER A:392 A:370 4.0 0.035 -91.8 171.3 4.0 0.035 0.0 HOH
 2.622
 HG
 O
SER B:392 B:370 4.0 0.035 -91.3 169.2 4.0 0.035 0.0 HOH
 2.710
 HG
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:392 A:370 2.0 0.017 -82.6 168.5 2.0 0.017 0.0 HOH
 3.250
 HB3
 O
SER B:392 B:370 4.0 0.035 -81.1 167.5 4.0 0.035 0.0 HOH
 2.760
 HG
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 SER A:370 A:370 4.0 0.035 -99.6 165.3 4.0 0.035 0.0 HOH
 3.047
 OG
 O
SER B:370 B:370 5.0 0.043 -85.5 163.1 5.0 0.043 0.0 HOH
 3.595
 OG
 O
SER C:370 C:370 5.0 0.043 -83.3 164.3 NA NA NA
SER D:370 D:370 3.0 0.026 -90.7 162.5 NA NA NA
SER E:370 E:370 4.0 0.035 -84.5 171.5 NA NA NA
SER F:370 F:370 2.0 0.017 -87.9 166.8 NA NA NA
SER G:370 G:370 4.0 0.035 -94.4 163.5 NA NA NA
SER H:370 H:370 5.0 0.043 -90.7 168.4 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 SER A:370 A:370 5.0 0.043 -92.6 169.4 5.0 0.043 0.0 HOH
 3.409
 OG
 O
SER B:370 B:370 4.0 0.035 -91.1 168.6 4.0 0.035 0.0 HOH
 2.732
 OG
 O
SER C:370 C:370 5.0 0.043 -88.0 170.3 NA NA NA
SER D:370 D:370 4.0 0.035 -92.2 167.8 NA NA NA
SER E:370 E:370 4.0 0.035 -87.2 169.5 NA NA NA
SER F:370 F:370 4.0 0.035 -94.7 169.2 NA NA NA
SER G:370 G:370 5.0 0.043 -91.0 169.8 NA NA NA
SER H:370 H:370 6.0 0.052 -87.3 167.5 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 SER A:370 A:370 4.0 0.035 -78.4 168.2 4.0 0.035 0.0 HOH
 5.686
 CB
 O
SER B:370 B:370 3.0 0.026 -88.1 170.4 3.0 0.026 0.0
SER C:370 C:370 3.0 0.026 -82.0 172.0 NA NA NA
SER D:370 D:370 3.0 0.026 -90.5 172.0 NA NA NA
SER E:370 E:370 4.0 0.035 -84.7 167.5 NA NA NA
SER F:370 F:370 5.0 0.043 -87.9 166.1 NA NA NA
SER G:370 G:370 3.0 0.026 -87.0 171.2 NA NA NA
SER H:370 H:370 4.0 0.035 -90.2 173.3 NA NA NA
SER I:370 I:370 3.0 0.026 -89.3 168.7 NA NA NA
SER J:370 J:370 2.0 0.017 -92.1 169.7 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 SER A:391 A:370 4.0 0.035 -82.5 168.0 4.0 0.035 0.0 HOH
 2.445
 HG
 O
SER B:391 B:370 5.0 0.043 -84.4 167.8 5.0 0.043 0.0 HOH
 4.915
 HB2
 O
SER C:391 C:370 4.0 0.035 -84.0 168.3 NA NA NA
SER D:391 D:370 3.0 0.026 -85.5 167.6 NA NA NA
SER E:391 E:370 4.0 0.035 -83.7 167.9 NA NA NA
SER F:391 F:370 4.0 0.035 -82.8 165.7 NA NA NA
SER G:391 G:370 4.0 0.035 -83.3 167.2 NA NA NA
SER H:391 H:370 4.0 0.035 -84.6 168.7 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:392 A:370 3.0 0.026 -83.2 168.6 3.0 0.026 0.0 SO4
HOH
 9.587
2.325
 HG
HG
 O4
O
SER B:392 B:370 3.0 0.026 -82.9 167.4 3.0 0.026 0.0 HOH
 2.471
 HG
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 SER A:392 A:370 4.0 0.035 -83.3 169.3 4.0 0.035 0.0 HOH
 3.449
 OG
 O
SER B:392 B:370 3.0 0.026 -80.2 168.6 3.0 0.026 0.0 HOH
 3.191
 OG
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 SER A:392 A:370 2.0 0.017 -81.2 169.3 2.0 0.017 0.0 HOH
 3.230
 OG
 O
SER B:392 B:370 3.0 0.026 -85.0 165.9 3.0 0.026 0.0 HOH
 3.083
 OG
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:392 A:370 4.0 0.035 -82.6 170.0 4.0 0.035 0.0 SO4
HOH
 9.908
2.453
 HG
HG
 O4
O
SER B:392 B:370 4.0 0.035 -82.6 170.1 4.0 0.035 0.0 SO4
HOH
 9.909
2.487
 HG
HG
 O1
O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:392 A:370 4.0 0.035 -84.5 167.9 4.0 0.035 0.0 HOH
 2.608
 HG
 O
SER B:392 B:370 4.0 0.035 -84.9 166.2 4.0 0.035 0.0 HOH
 2.637
 HG
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:392 A:370 2.0 0.017 -75.8 165.7 2.0 0.017 0.0 SO4
HOH
 9.121
2.491
 HG
HG
 O3
O
SER B:392 B:370 3.0 0.026 -78.5 165.5 3.0 0.026 0.0 HOH
 2.773
 HG
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 SER A:392 A:370 3.0 0.026 -87.2 172.0 3.0 0.026 0.0 HOH
 2.594
 HG
 O
SER B:392 B:370 4.0 0.035 -89.2 172.8 4.0 0.035 0.0 HOH
 2.556
 HG
 O
SER C:392 C:370 3.0 0.026 -89.2 171.7 NA NA NA
SER D:392 D:370 3.0 0.026 -89.4 171.1 NA NA NA
SER E:392 E:370 4.0 0.035 -86.9 172.0 NA NA NA
SER F:392 F:370 3.0 0.026 -88.2 171.0 NA NA NA
SER G:392 G:370 4.0 0.035 -88.3 170.4 NA NA NA
SER H:392 H:370 4.0 0.035 -89.9 169.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 SER A:405 A:405 4.0 0.035 -78.6 165.2