Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107559675 . G A CCDS5749.1:NM_000108.3:c.1501Gcg>Acg_NP_000099.2:p.501A>T Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 ALA A:487 A:466 5.0 0.043 H -60.6 -37.6 5.0 0.043 0.0
ALA B:487 B:466 5.0 0.043 H -62.7 -26.2 5.0 0.043 0.0 HOH
 7.203
 N
 O
ALA C:487 C:466 4.0 0.035 H -76.6 -25.8 NA NA NA
ALA D:487 D:466 5.0 0.043 H -84.8 -26.5 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 ALA A:466 A:466 4.0 0.035 H -86.4 -9.3 4.0 0.035 0.0
ALA B:466 B:466 5.0 0.043 H -77.1 -25.9 5.0 0.043 0.0
ALA C:466 C:466 6.0 0.052 H -67.2 -24.8 NA NA NA
ALA D:466 D:466 4.0 0.035 T -95.6 5.1 NA NA NA
ALA E:466 E:466 4.0 0.035 H -72.3 -56.7 NA NA NA
ALA F:466 F:466 6.0 0.052 H -64.8 -46.8 NA NA NA
ALA G:466 G:466 6.0 0.052 H -83.8 -32.7 NA NA NA
ALA H:466 H:466 6.0 0.052 H -59.9 -46.9 NA NA NA
ALA I:466 I:466 1.0 0.009 H -75.4 -27.9 NA NA NA
ALA J:466 J:466 5.0 0.043 H -71.5 -45.6 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 6.0 0.052 H -66.0 -37.2 6.0 0.052 0.0 HOH
 5.695
 N
 O
ALA B:488 B:466 6.0 0.052 H -64.2 -39.2 6.0 0.052 0.0 HOH
 3.195
 O
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 6.0 0.052 H -66.9 -36.0 6.0 0.052 0.0 HOH
 5.531
 N
 O
ALA B:488 B:466 4.0 0.035 H -65.2 -38.1 4.0 0.035 0.0 1PE
HOH
 8.946
3.152
 C
O
 H221
O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ALA A:466 A:466 7.0 0.061 H -65.0 -36.2 7.0 0.061 0.0 HOH
 5.334
 N
 O
ALA B:466 B:466 6.0 0.052 H -59.3 -45.9 6.0 0.052 0.0 HOH
 2.814
 O
 O
ALA C:466 C:466 4.0 0.035 H -66.3 -42.8 NA NA NA
ALA D:466 D:466 4.0 0.035 H -75.3 -20.4 NA NA NA
ALA E:466 E:466 4.0 0.035 H -72.7 -40.6 NA NA NA
ALA F:466 F:466 6.0 0.052 H -80.5 -33.2 NA NA NA
ALA G:466 G:466 7.0 0.061 H -73.7 -38.9 NA NA NA
ALA H:466 H:466 5.0 0.043 H -66.0 -41.6 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 ALA A:466 A:466 7.0 0.061 H -65.2 -40.3 7.0 0.061 0.0 HOH
 5.016
 O
 O
ALA B:466 B:466 5.0 0.043 H -62.2 -41.8 5.0 0.043 0.0 HOH
 2.568
 O
 O
ALA C:466 C:466 4.0 0.035 H -63.1 -39.7 NA NA NA
ALA D:466 D:466 6.0 0.052 H -67.9 -35.6 NA NA NA
ALA E:466 E:466 4.0 0.035 H -66.8 -38.4 NA NA NA
ALA F:466 F:466 5.0 0.043 H -66.6 -34.9 NA NA NA
ALA G:466 G:466 6.0 0.052 H -64.9 -35.6 NA NA NA
ALA H:466 H:466 4.0 0.035 H -68.4 -37.9 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 ALA A:466 A:466 10.0 0.087 H -78.4 -49.8 10.0 0.087 0.0 HOH
 5.933
 N
 O
ALA B:466 B:466 6.0 0.052 H -79.4 -36.8 6.0 0.052 0.0 HOH
 5.289
 N
 O
ALA C:466 C:466 6.0 0.052 H -68.8 -38.4 NA NA NA
ALA D:466 D:466 6.0 0.052 H -68.7 -37.9 NA NA NA
ALA E:466 E:466 7.0 0.061 H -71.4 -27.4 NA NA NA
ALA F:466 F:466 6.0 0.052 H -65.2 -39.7 NA NA NA
ALA G:466 G:466 6.0 0.052 H -70.5 -29.8 NA NA NA
ALA H:466 H:466 7.0 0.061 H -64.5 -38.2 NA NA NA
ALA I:466 I:466 5.0 0.043 H -66.1 -36.9 NA NA NA
ALA J:466 J:466 5.0 0.043 H -70.1 -37.4 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 ALA A:487 A:466 5.0 0.043 H -66.2 -36.6 5.0 0.043 0.0 HOH
 5.899
 HA
 O
ALA B:487 B:466 6.0 0.052 H -68.2 -35.9 6.0 0.052 0.0 HOH
 5.759
 N
 O
ALA C:487 C:466 5.0 0.043 H -66.0 -41.8 NA NA NA
ALA D:487 D:466 8.0 0.07 H -67.4 -40.5 NA NA NA
ALA E:487 E:466 4.0 0.035 H -66.5 -36.2 NA NA NA
ALA F:487 F:466 4.0 0.035 H -67.1 -33.2 NA NA NA
ALA G:487 G:466 5.0 0.043 H -66.2 -35.1 NA NA NA
ALA H:487 H:466 5.0 0.043 H -68.8 -35.8 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 7.0 0.061 H -66.4 -35.5 7.0 0.061 0.0 HOH
 5.398
 N
 O
ALA B:488 B:466 5.0 0.043 H -65.6 -37.0 5.0 0.043 0.0 1PE
HOH
 7.936
3.283
 N
O
 HO7
O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 ALA A:488 A:466 5.0 0.043 H -67.9 -37.3 5.0 0.043 0.0 HOH
 5.653
 N
 O
ALA B:488 B:466 6.0 0.052 H -66.8 -35.5 6.0 0.052 0.0 HOH
 5.329
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 ALA A:488 A:466 7.0 0.061 H -70.8 -34.1 7.0 0.061 0.0 HOH
 3.499
 O
 O
ALA B:488 B:466 7.0 0.061 H -72.3 -36.5 7.0 0.061 0.0 HOH
 3.444
 O
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 7.0 0.061 H -67.2 -37.9 7.0 0.061 0.0 HOH
 3.059
 O
 O
ALA B:488 B:466 6.0 0.052 H -67.0 -38.1 6.0 0.052 0.0 HOH
 3.031
 O
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 6.0 0.052 H -64.9 -35.8 6.0 0.052 0.0 HOH
 2.935
 O
 O
ALA B:488 B:466 5.0 0.043 H -64.5 -36.5 5.0 0.043 0.0 HOH
 3.128
 O
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 6.0 0.052 H -67.8 -34.9 6.0 0.052 0.0 HOH
 5.822
 N
 O
ALA B:488 B:466 6.0 0.052 H -66.3 -36.0 6.0 0.052 0.0 HOH
 3.156
 O
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 ALA A:488 A:466 6.0 0.052 H -72.8 -32.5 6.0 0.052 0.0 HOH
 8.537
 N
 O
ALA B:488 B:466 7.0 0.061 H -71.6 -32.4 7.0 0.061 0.0 HOH
 3.145
 HA
 O
ALA C:488 C:466 4.0 0.035 H -73.0 -32.4 NA NA NA
ALA D:488 D:466 7.0 0.061 H -71.4 -32.5 NA NA NA
ALA E:488 E:466 6.0 0.052 H -72.0 -31.5 NA NA NA
ALA F:488 F:466 6.0 0.052 H -71.1 -32.0 NA NA NA
ALA G:488 G:466 5.0 0.043 H -70.8 -28.7 NA NA NA
ALA H:488 H:466 5.0 0.043 H -70.5 -33.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 ALA A:501 A:501 5.0 0.043 H -66.6 -43.8