Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 44875202 . G A CCDS5495.1:NM_138635.3:c.251cCg>cTg_NP_619541.1:p.84P>L Homo sapiens H2A histone family member V (H2AFV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3waa 3 Q71UI9 100.0 1e-87 X-RAY
 2013-12-18 PRO C:87 C:83 62.0 0.428 H -60.5 -28.2 14.0 0.097 0.331 D:P06899:0.331
 DA
DA
 7.773
8.900
 CD
CD
 OP1
OP1
PRO G:87 G:83 60.0 0.414 H -60.8 -26.9 14.0 0.097 0.317 H:P06899:0.317
 DC
DA
DT
 9.235
9.947
7.678
 CD
CD
CD
 OP1
O3'
OP1
1f66 4 P17317 98.43 4e-86 X-RAY
 2000-11-27 PRO E:84 C:883 61.0 0.421 H -62.7 -37.8 15.0 0.103 0.318 F:P02281:0.317
 DG
DA
DA
HOH
 9.931
8.039
8.930
3.617
 CD
CD
CD
CD
 O3'
OP1
OP1
O
PRO I:84 G:1083 60.0 0.414 H -63.2 -37.8 17.0 0.117 0.297 J:P02281:0.297
 DA
DG
DA
HOH
 8.941
9.790
8.269
3.763
 CD
CD
CD
CD
 OP1
O3'
OP1
O
7m1x 5 P0C0S6 98.43 4e-86 EM
 2021-09-29 PRO E:84 C:883 66.0 0.455 H -52.0 -33.1 9.0 0.062 0.393 F:P02281:0.393
 DC
DA
 8.258
9.254
 CD
CD
 OP1
OP1
PRO I:84 G:1083 60.0 0.414 H -53.0 -28.1 10.0 0.069 0.345 J:P02281:0.345
 DG
DA
 9.599
7.595
 CD
CD
 O3'
OP1
3wa9 3 P0C0S5 98.43 5e-86 X-RAY
 2013-12-18 PRO C:87 C:83 60.0 0.414 H -53.4 -40.3 10.0 0.069 0.345 D:P06899:0.345
 DG
DA
DC
DA
 9.811
7.468
9.930
9.300
 CD
CD
N
CD
 O3'
OP1
OP1
OP1
PRO G:87 G:83 59.0 0.407 H -59.7 -32.7 12.0 0.083 0.324 H:P06899:0.324
 DG
DC
DA
DT
 9.854
9.346
9.866
7.507
 N
CD
CD
CD
 OP1
OP1
O3'
OP1
5b31 5 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 PRO G:87 G:83 60.0 0.414 H -51.7 -40.8 11.0 0.076 0.338 H:P06899:0.338
 DC
DA
DT
HOH
 9.411
9.884
7.830
3.444
 CD
CD
CD
CB
 OP1
O3'
OP1
O
5b32 5 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 PRO G:87 G:83 64.0 0.441 H -47.9 -36.1 15.0 0.103 0.338 H:P06899:0.338
 DC
DA
DT
HOH
 8.396
9.555
7.122
3.311
 CD
CD
CD
CD
 OP1
O3'
OP1
O
5b33 3 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 PRO C:87 C:83 60.0 0.414 H -60.6 -28.8 12.0 0.083 0.331 D:P06899:0.331
 DA
DA
 7.805
9.017
 CD
CD
 OP1
OP1
PRO G:87 G:83 61.0 0.421 H -65.5 -21.2 14.0 0.097 0.324 H:P06899:0.324
 DC
DA
DT
 9.175
9.909
7.788
 CD
CD
CD
 OP1
O3'
OP1
6jou 3 P0C0S5 97.64 4e-85 X-RAY
 2020-03-25 PRO C:87 C:83 61.0 0.421 H -52.7 -33.9 12.0 0.083 0.338 D:P06899:0.338
 DG
DA
DA
HOH
 9.881
7.873
9.524
3.471
 CD
CD
CD
CG
 O3'
OP1
OP1
O
PRO G:87 G:83 65.0 0.448 H -50.5 -36.3 13.0 0.09 0.358 H:P06899:0.359
 DC
DA
DT
HOH
 9.156
9.904
7.538
3.414
 CD
CD
CD
CG
 OP1
O3'
OP1
O
5z30 3 P0C0S5 97.64 8e-85 X-RAY
 2018-07-18 PRO C:87 C:83 66.0 0.455 H -49.7 -38.1 12.0 0.083 0.372 D:P06899:0.372
 DA
DA
HOH
 7.630
9.288
9.700
 CD
CD
O
 OP1
OP1
O
PRO G:87 G:83 57.0 0.393 H -49.5 -40.6 8.0 0.055 0.338 H:P06899:0.338
 DC
DA
DT
HOH
 9.145
9.844
7.758
7.462
 CD
CD
CD
CB
 OP1
O3'
OP1
O
4cay 1 P0C0S5 98.18 2e-74 X-RAY
 2014-01-22 PRO A:67 A:83 108.0 0.745 H -54.5 -36.4 2.0 0.014 0.731 B:P06899:0.483
C:Q9BTT0:0.497
 HOH
 3.726
 CB
 O
5fug 1 P0C0S5 99.08 4e-74 X-RAY
 2016-03-09 PRO A:66 A:83 105.0 0.724 H -59.0 -26.3 NA NA NA
PRO D:66 D:83 109.0 0.752 H -52.4 -24.1 NA NA NA
PRO G:66 G:83 108.0 0.745 H -57.8 -17.0 0.0 0.0 0.745 I:Q15906:0.517
H:P06899:0.469
PRO J:66 J:83 111.0 0.766 H -48.2 -33.4 NA NA NA
6m4d 3 Q71UI9 100.0 8e-73 EM
 2020-09-23 PRO C:84 C:83 73.0 0.503 H -61.8 -35.1 43.0 0.297 0.206 D:Q16778:0.207
PRO G:84 G:83 71.0 0.49 H -61.8 -35.1 44.0 0.303 0.187 H:Q16778:0.186
4nft 1 Q16778,P0C0S5 98.99 1e-65 X-RAY
 2014-04-09 PRO A:166 A:163 28.0 0.193 H -50.0 -31.1 28.0 0.193 0.0 HOH
 3.970
 CD
 O
PRO B:166 B:163 28.0 0.193 H -47.9 -33.0 NA NA NA
PRO C:166 C:163 40.0 0.276 H -56.8 -37.7 NA NA NA
PRO D:166 D:163 40.0 0.276 H -56.7 -36.9 NA NA NA
5chl 2 P0C0S5 92.23 6e-63 X-RAY
 2016-03-09 PRO B:157 B:157 38.0 0.262 H -62.5 -21.7 0.0 0.0 0.262 A:Q9VKM6:0.262
 HOH
 3.829
 CD
 O
6k0c 1 Q27894,Q27511 91.0 2e-60 X-RAY
 2019-10-09 PRO A:165 D:192 48.0 0.331 H -49.5 -33.7 48.0 0.331 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q71ui9-f1 1 Q71UI9 100.0 4e-88 PRO A:84 A:84 61.0 0.421 H -54.5 -30.6
af-p0c0s5-f1 1 P0C0S5 98.43 2e-86 PRO A:84 A:84 62.0 0.428 H -55.0 -30.0