Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 44875224 . G A CCDS5495.1:NM_138635.3:c.229Ctc>Ttc_NP_619541.1:p.77L>F Homo sapiens H2A histone family member V (H2AFV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3waa 3 Q71UI9 100.0 1e-87 X-RAY
 2013-12-18 LEU C:80 C:76 91.0 0.535 T -120.5 8.9 91.0 0.535 0.0 DC
DA
DG
DC
DA
DG
 9.320
8.055
9.236
6.962
8.019
9.438
 CD2
O
O
O
CD2
O
 OP2
OP2
O3'
OP2
OP2
O6
LEU G:80 G:76 97.0 0.571 T -116.3 -0.1 97.0 0.571 0.0 DT
DG
DC
DA
 9.921
7.771
7.461
9.334
 O
O
CD2
CD2
 O3'
OP2
OP2
OP2
1f66 4 P17317 98.43 4e-86 X-RAY
 2000-11-27 LEU E:77 C:876 100.0 0.588 T -118.6 22.8 100.0 0.588 0.0 DC
DA
DG
DC
DA
MN
HOH
 8.716
8.417
9.376
7.163
8.056
9.143
5.865
 CD2
O
O
O
O
O
CD2
 OP2
OP2
O3'
OP2
OP2
MN
O
LEU I:77 G:1076 101.0 0.594 T -122.9 4.4 101.0 0.594 0.0 DG
DC
DA
MN
HOH
 9.553
7.352
7.967
9.286
4.731
 O
O
O
O
O
 O3'
OP2
OP2
MN
O
7m1x 5 P0C0S6 98.43 4e-86 EM
 2021-09-29 LEU E:77 C:876 85.0 0.5 T -113.8 3.2 85.0 0.5 0.0 DA
DG
DA
 9.696
7.610
7.708
 O
O
O
 O3'
OP2
OP2
LEU I:77 G:1076 99.0 0.582 H -89.5 -2.8 99.0 0.582 0.0 DG
DC
DA
 9.870
7.554
8.572
 O
O
O
 O3'
OP1
OP1
3wa9 3 P0C0S5 98.43 5e-86 X-RAY
 2013-12-18 LEU C:80 C:76 83.0 0.488 T -111.2 28.0 83.0 0.488 0.0 DC
DA
DG
DC
DA
 9.535
8.389
8.807
6.573
8.181
 CD2
O
O
O
O
 OP2
OP2
O3'
OP2
OP2
LEU G:80 G:76 100.0 0.588 T -124.9 8.1 100.0 0.588 0.0 DT
DG
DC
DA
 9.581
7.391
7.656
9.487
 O
O
CD2
CD1
 O3'
OP2
OP2
OP2
5b31 5 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 LEU G:80 G:76 101.0 0.594 T -102.8 8.1 101.0 0.594 0.0 DT
DG
DC
DA
MN
HOH
 9.602
7.357
8.094
9.648
9.275
7.828
 O
O
O
CD2
O
CB
 O3'
OP2
OP2
OP2
MN
O
5b32 5 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 LEU G:80 G:76 97.0 0.571 T -113.2 14.4 97.0 0.571 0.0 DT
DG
DC
DA
DC
 9.995
7.741
8.827
7.989
9.106
 O
O
O
CG
O
 O3'
OP2
OP2
OP2
OP2
5b33 3 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 LEU C:80 C:76 87.0 0.512 T -125.1 25.5 87.0 0.512 0.0 DC
DA
DG
DC
DA
DG
 8.779
8.183
9.065
6.754
8.396
9.969
 CD2
O
O
O
O
O
 OP2
OP2
O3'
OP2
OP2
O6
LEU G:80 G:76 95.0 0.559 T -127.6 12.6 95.0 0.559 0.0 DT
DG
DC
DA
DA
 9.342
7.118
7.914
9.609
9.198
 O
O
O
O
CD2
 O3'
OP2
OP2
N6
OP2
6jou 3 P0C0S5 97.64 4e-85 X-RAY
 2020-03-25 LEU C:80 C:76 101.0 0.594 T -87.9 17.1 101.0 0.594 0.0 DC
DA
DG
DC
DA
MN
HOH
 9.293
8.972
9.457
7.110
8.486
9.709
7.473
 CD2
O
O
O
O
O
N
 OP2
OP2
O3'
OP2
OP2
MN
O
LEU G:80 G:76 97.0 0.571 T -95.4 4.5 97.0 0.571 0.0 DT
DG
DC
DA
DC
HOH
 9.883
7.447
8.976
7.920
7.814
4.169
 O
O
O
O
O
CD2
 O3'
OP2
OP2
C5'
OP2
O
5z30 3 P0C0S5 97.64 8e-85 X-RAY
 2018-07-18 LEU C:80 C:76 92.0 0.541 T -111.7 9.2 92.0 0.541 0.0 DC
DA
DG
DC
DA
MN
 9.410
8.571
9.683
7.344
7.978
9.349
 CD2
O
O
O
O
O
 OP2
OP2
O3'
OP2
OP2
MN
LEU G:80 G:76 107.0 0.629 T -116.9 10.8 107.0 0.629 0.0 DT
DG
DC
DA
DC
 9.875
7.504
7.883
7.986
8.176
 O
O
CD2
CD1
O
 O3'
OP2
OP2
OP2
OP2
4cay 1 P0C0S5 98.18 2e-74 X-RAY
 2014-01-22 LEU A:60 A:76 101.0 0.594 T -87.4 4.2 101.0 0.594 0.0 HOH
 3.452
 CG
 O
5fug 1 P0C0S5 99.08 4e-74 X-RAY
 2016-03-09 LEU A:59 A:76 113.0 0.665 S 57.2 -42.8 NA NA NA
LEU D:59 D:76 112.0 0.659 S 71.8 2.9 NA NA NA
LEU G:59 G:76 98.0 0.576 S 72.5 -2.2 98.0 0.576 0.0
LEU J:59 J:76 125.0 0.735 S 50.5 0.2 NA NA NA
6m4d 3 Q71UI9 100.0 8e-73 EM
 2020-09-23 LEU C:77 C:76 101.0 0.594 T -94.9 -1.4 101.0 0.594 0.0 DA
DG
 9.588
7.476
 O
O
 O3'
OP1
LEU G:77 G:76 99.0 0.582 T -94.9 -1.4 99.0 0.582 0.0
4nft 1 Q16778,P0C0S5 98.99 1e-65 X-RAY
 2014-04-09 LEU A:159 A:156 92.0 0.541 T -109.3 8.4 92.0 0.541 0.0 HOH
 8.781
 O
 O
LEU B:159 B:156 93.0 0.547 T -108.6 9.3 NA NA NA
LEU C:159 C:156 68.0 0.4 T -94.1 12.9 NA NA NA
LEU D:159 D:156 70.0 0.412 T -93.7 12.7 NA NA NA
5chl 2 P0C0S5 92.23 6e-63 X-RAY
 2016-03-09 LEU B:150 B:150 141.0 0.829 S -70.9 138.3 141.0 0.829 0.0 HOH
 2.887
 N
 O
6k0c 1 Q27894,Q27511 91.0 2e-60 X-RAY
 2019-10-09 LEU A:158 D:185 101.0 0.594 T -92.4 6.5 101.0 0.594 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q71ui9-f1 1 Q71UI9 100.0 4e-88 LEU A:77 A:77 96.0 0.565 T -84.3 8.5
af-p0c0s5-f1 1 P0C0S5 98.43 2e-86 LEU A:77 A:77 96.0 0.565 T -83.2 8.4