Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99751537 . G A CCDS34702.1:NM_001008395.2:c.250Gtg>Atg_NP_001008396.1:p.84V>M Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 VAL D:84 D:84 18.0 0.116 E -94.9 125.2 4.0 0.026 0.09 E:Q6IAA8:0.09
 HOH
 4.454
 CG2
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 VAL D:84 D:84 24.0 0.155 E -100.6 121.4 13.0 0.084 0.071 E:Q6IAA8:0.071
 HOH
 7.281
 N
 O
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 VAL N:84 I:84 17.0 0.11 E -90.4 135.0 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 VAL D:84 D:84 23.0 0.148 E -100.6 128.5 10.0 0.065 0.083 A:Q6IAA8:0.084
 HOH
 3.374
 CG2
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 VAL D:84 D:84 21.0 0.135 E -91.0 134.0 7.0 0.045 0.09 E:Q6IAA8:0.09
 HOH
 6.782
 N
 O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 VAL D:84 D:84 21.0 0.135 E -106.7 119.6 9.0 0.058 0.077 E:Q6IAA8:0.077
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 VAL D:84 D:84 23.0 0.148 E -100.5 128.5 10.0 0.065 0.083 A:Q6IAA8:0.084
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 VAL E:84 D:84 18.0 0.116 E -122.1 144.6 10.0 0.065 0.051 F:Q6IAA8:0.052
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 VAL D:84 D:84 27.0 0.174 E -106.8 116.8 27.0 0.174 0.0
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 VAL D:84 D:84 18.0 0.116 E -119.5 102.2 18.0 0.116 0.0
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 VAL D:86 D:84 22.0 0.142 E -100.7 126.2 8.0 0.052 0.09 A:Q6IAA8:0.09
VAL I:86 I:84 34.0 0.219 E -119.1 128.7 NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 VAL D:86 D:84 22.0 0.142 E -85.2 118.5 8.0 0.052 0.09 A:Q6IAA8:0.09
VAL I:86 I:84 22.0 0.142 E -100.4 120.1 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 VAL B:86 B:84 19.0 0.123 E -120.7 129.1 19.0 0.123 0.0 SO4
HOH
 7.669
3.513
 CG2
CG2
 O2
O
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 VAL B:88 B:84 8.0 0.052 E -103.9 127.6 8.0 0.052 0.0
VAL D:88 D:84 25.0 0.161 E -120.9 132.3 NA NA NA
VAL F:88 F:84 9.0 0.058 E -106.3 133.7 NA NA NA
VAL H:88 H:84 9.0 0.058 E -140.4 142.7 NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 VAL G:85 G:84 34.0 NA E -144.5 113.4 34.0 NA NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 VAL I:83 D:84 18.0 0.116 E -102.1 131.3 NA NA NA
5yk3 4 Q0VGL1 98.85 2e-58 X-RAY
 2019-01-23 VAL D:80 n:84 22.0 0.142 E -98.2 128.7 14.0 0.09 0.052 E:Q6IAA8:0.052
5yk5 1 Q0VGL1 100.0 8e-57 X-RAY
 2018-12-12 VAL A:76 A:84 4.0 0.026 E -126.8 130.7 4.0 0.026 0.0 HOH
 5.259
 C
 O
5yk5 3 Q0VGL1 98.8 3e-55 X-RAY
 2018-12-12 VAL C:76 C:84 5.0 0.032 E -115.5 121.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 VAL A:84 A:84 19.0 0.123 E -101.6 127.1