Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107556014 . G A CCDS5749.1:NM_000108.3:c.748Gga>Aga_NP_000099.2:p.250G>R Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLY A:236 A:215 29.0 0.387 75.7 -168.4 29.0 0.387 0.0 HOH
 3.050
 N
 O
GLY B:236 B:215 25.0 0.333 74.1 -166.2 25.0 0.333 0.0 HOH
 3.303
 C
 O
GLY C:236 C:215 11.0 0.147 90.1 -159.1 NA NA NA
GLY D:236 D:215 26.0 0.347 93.2 -155.3 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLY A:215 A:215 21.0 0.28 -77.1 -137.4 21.0 0.28 0.0 HOH
 2.712
 CA
 O
GLY B:215 B:215 22.0 0.293 -76.8 -129.5 22.0 0.293 0.0 HOH
 3.525
 O
 O
GLY C:215 C:215 19.0 0.253 -63.3 -133.8 NA NA NA
GLY D:215 D:215 15.0 0.2 -55.7 -143.7 NA NA NA
GLY E:215 E:215 17.0 0.227 80.3 172.6 NA NA NA
GLY F:215 F:215 24.0 0.32 -72.0 -145.1 NA NA NA
GLY G:215 G:215 16.0 0.213 -75.5 -137.8 NA NA NA
GLY H:215 H:215 19.0 0.253 -68.0 -130.4 NA NA NA
GLY I:215 I:215 29.0 0.387 96.8 -141.9 NA NA NA
GLY J:215 J:215 20.0 0.267 -73.8 -117.4 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 21.0 0.28 80.4 -165.3 21.0 0.28 0.0 SO4
HOH
 7.504
2.121
 O
H
 O4
O
GLY B:237 B:215 25.0 0.333 81.1 -165.7 25.0 0.333 0.0 SO4
HOH
 6.920
1.972
 O
H
 O1
O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 25.0 0.333 83.6 -165.3 25.0 0.333 0.0 SO4
HOH
 7.068
2.203
 O
H
 O4
O
GLY B:237 B:215 25.0 0.333 84.6 -166.5 25.0 0.333 0.0 SO4
HOH
 6.978
1.962
 O
H
 O1
O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLY A:215 A:215 15.0 0.2 80.4 -160.3 15.0 0.2 0.0 SO4
NAD
HOH
 6.679
3.806
2.932
 O
CA
N
 O3
O2N
O
GLY B:215 B:215 21.0 0.28 82.7 -163.7 21.0 0.28 0.0 SO4
NAD
HOH
 6.414
3.307
2.761
 O
CA
N
 O1
O5D
O
GLY C:215 C:215 22.0 0.293 82.0 -161.5 NA NA NA
GLY D:215 D:215 21.0 0.28 82.0 -154.0 NA NA NA
GLY E:215 E:215 24.0 0.32 80.5 -159.4 NA NA NA
GLY F:215 F:215 29.0 0.387 99.3 -177.8 NA NA NA
GLY G:215 G:215 18.0 0.24 71.2 -165.3 NA NA NA
GLY H:215 H:215 21.0 0.28 77.3 -156.3 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLY A:215 A:215 21.0 0.28 83.3 -161.8 21.0 0.28 0.0 NAI
HOH
 4.393
2.939
 CA
N
 O1A
O
GLY B:215 B:215 26.0 0.347 84.9 -166.0 26.0 0.347 0.0 NAI
HOH
 4.324
2.863
 CA
N
 O1A
O
GLY C:215 C:215 27.0 0.36 81.8 -166.4 NA NA NA
GLY D:215 D:215 24.0 0.32 87.0 -159.9 NA NA NA
GLY E:215 E:215 24.0 0.32 76.4 -169.7 NA NA NA
GLY F:215 F:215 25.0 0.333 85.6 -166.5 NA NA NA
GLY G:215 G:215 19.0 0.253 81.7 -158.4 NA NA NA
GLY H:215 H:215 26.0 0.347 79.6 -168.3 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLY A:215 A:215 25.0 0.333 69.0 -170.9 25.0 0.333 0.0 SO4
HOH
 7.849
3.043
 O
N
 O2
O
GLY B:215 B:215 24.0 0.32 95.5 -165.3 24.0 0.32 0.0 SO4
HOH
 7.212
3.511
 O
CA
 O4
O
GLY C:215 C:215 23.0 0.307 79.3 -167.9 NA NA NA
GLY D:215 D:215 25.0 0.333 81.3 -168.4 NA NA NA
GLY E:215 E:215 21.0 0.28 81.4 -169.8 NA NA NA
GLY F:215 F:215 24.0 0.32 87.7 -168.4 NA NA NA
GLY G:215 G:215 22.0 0.293 74.9 -167.3 NA NA NA
GLY H:215 H:215 19.0 0.253 77.5 -167.6 NA NA NA
GLY I:215 I:215 23.0 0.307 88.7 -171.3 NA NA NA
GLY J:215 J:215 23.0 0.307 76.8 -176.6 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLY A:236 A:215 24.0 0.32 88.3 -167.0 24.0 0.32 0.0 HOH
 2.859
 HA3
 O
GLY B:236 B:215 21.0 0.28 86.0 -171.6 21.0 0.28 0.0 HOH
 2.173
 H
 O
GLY C:236 C:215 20.0 0.267 87.5 -166.8 NA NA NA
GLY D:236 D:215 26.0 0.347 85.8 -167.4 NA NA NA
GLY E:236 E:215 24.0 0.32 86.6 -163.7 NA NA NA
GLY F:236 F:215 23.0 0.307 87.7 -171.5 NA NA NA
GLY G:236 G:215 20.0 0.267 86.3 -165.4 NA NA NA
GLY H:236 H:215 23.0 0.307 85.8 -168.3 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 24.0 0.32 81.4 -165.8 24.0 0.32 0.0 SO4
HOH
 7.076
2.085
 O
H
 O4
O
GLY B:237 B:215 25.0 0.333 82.4 -164.9 25.0 0.333 0.0 SO4
HOH
 7.201
2.151
 O
H
 O1
O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLY A:237 A:215 17.0 0.227 83.8 -161.1 17.0 0.227 0.0 HOH
 2.785
 N
 O
GLY B:237 B:215 21.0 0.28 93.3 -168.5 21.0 0.28 0.0 HOH
 3.017
 N
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLY A:237 A:215 24.0 0.32 85.5 -162.7 24.0 0.32 0.0 SO4
HOH
 7.364
2.803
 O
N
 O4
O
GLY B:237 B:215 26.0 0.347 87.1 -162.8 26.0 0.347 0.0 SO4
SO4
HOH
 3.427
6.802
2.892
 CA
O
N
 O3
O2
O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 25.0 0.333 86.2 -169.3 25.0 0.333 0.0 SO4
HOH
 7.606
2.059
 O
H
 O4
O
GLY B:237 B:215 27.0 0.36 86.8 -170.1 27.0 0.36 0.0 SO4
HOH
 7.097
2.084
 O
H
 O1
O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 20.0 0.267 86.0 -167.3 20.0 0.267 0.0 SO4
HOH
 7.358
1.903
 O
H
 O4
O
GLY B:237 B:215 24.0 0.32 85.8 -166.8 24.0 0.32 0.0 SO4
HOH
 6.981
1.943
 O
H
 O1
O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 26.0 0.347 90.2 -167.1 26.0 0.347 0.0 SO4
HOH
 7.529
2.080
 O
H
 O3
O
GLY B:237 B:215 28.0 0.373 91.9 -167.8 28.0 0.373 0.0 SO4
HOH
 6.914
2.158
 O
H
 O1
O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLY A:237 A:215 20.0 0.267 88.7 -169.6 20.0 0.267 0.0 SO4
HOH
 7.118
2.138
 O
H
 O4
O
GLY B:237 B:215 24.0 0.32 85.2 -170.1 24.0 0.32 0.0 HOH
 2.237
 H
 O
GLY C:237 C:215 21.0 0.28 86.6 -170.0 NA NA NA
GLY D:237 D:215 24.0 0.32 86.8 -171.3 NA NA NA
GLY E:237 E:215 21.0 0.28 89.1 -168.9 NA NA NA
GLY F:237 F:215 25.0 0.333 87.4 -167.9 NA NA NA
GLY G:237 G:215 22.0 0.293 90.4 -168.1 NA NA NA
GLY H:237 H:215 21.0 0.28 88.0 -168.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLY A:250 A:250 21.0 0.28 93.5 -160.9