Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557267 . G A CCDS5749.1:NM_000108.3:c.904Gaa>Aaa_NP_000099.2:p.302E>K Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 GLU A:288 A:267 92.0 0.484 E -139.6 -172.8 92.0 0.484 0.0 HOH
 2.961
 OE2
 O
GLU B:288 B:267 99.0 0.521 E 176.5 154.9 99.0 0.521 0.0
GLU C:288 C:267 97.0 0.511 E -113.7 178.8 NA NA NA
GLU D:288 D:267 61.0 0.321 E -126.5 171.3 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 GLU A:267 A:267 118.0 0.621 E -132.7 -179.9 118.0 0.621 0.0 HOH
 3.809
 CB
 O
GLU B:267 B:267 95.0 0.5 E 178.9 152.4 95.0 0.5 0.0 HOH
 7.227
 O
 O
GLU C:267 C:267 94.0 0.495 E -155.7 152.8 NA NA NA
GLU D:267 D:267 102.0 0.537 E -170.5 164.1 NA NA NA
GLU E:267 E:267 98.0 0.516 E -177.6 157.0 NA NA NA
GLU F:267 F:267 92.0 0.484 E -158.2 155.7 NA NA NA
GLU G:267 G:267 94.0 0.495 E -136.5 172.5 NA NA NA
GLU H:267 H:267 89.0 0.468 E -167.8 173.4 NA NA NA
GLU I:267 I:267 98.0 0.516 153.8 147.3 NA NA NA
GLU J:267 J:267 86.0 0.453 E -172.2 143.8 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 62.0 0.326 E -165.7 163.0 62.0 0.326 0.0 HOH
 2.711
 HB2
 O
GLU B:289 B:267 61.0 0.321 E -163.9 165.1 61.0 0.321 0.0 HOH
 7.475
 HG3
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 59.0 0.311 E -142.2 163.5 59.0 0.311 0.0 HOH
 9.871
 OE1
 O
GLU B:289 B:267 61.0 0.321 E -141.2 164.1 61.0 0.321 0.0 HOH
 7.782
 OE1
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLU A:267 A:267 94.0 0.495 E -117.7 -178.6 94.0 0.495 0.0 HOH
 3.152
 OE2
 O
GLU B:267 B:267 70.0 0.368 E -142.8 170.4 70.0 0.368 0.0 HOH
 3.015
 O
 O
GLU C:267 C:267 70.0 0.368 E -127.0 176.4 NA NA NA
GLU D:267 D:267 77.0 0.405 E -152.3 175.0 NA NA NA
GLU E:267 E:267 69.0 0.363 E -135.2 170.5 NA NA NA
GLU F:267 F:267 76.0 0.4 E -126.8 179.3 NA NA NA
GLU G:267 G:267 85.0 0.447 E -134.4 174.1 NA NA NA
GLU H:267 H:267 73.0 0.384 E -133.5 169.5 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 GLU A:267 A:267 87.0 0.458 E -166.1 173.6 87.0 0.458 0.0
GLU B:267 B:267 63.0 0.332 E -153.9 165.8 63.0 0.332 0.0 HOH
 2.699
 OE1
 O
GLU C:267 C:267 66.0 0.347 E -141.5 167.5 NA NA NA
GLU D:267 D:267 75.0 0.395 E -154.6 172.6 NA NA NA
GLU E:267 E:267 68.0 0.358 E -147.0 166.0 NA NA NA
GLU F:267 F:267 73.0 0.384 E -149.2 174.6 NA NA NA
GLU G:267 G:267 81.0 0.426 E -146.0 169.5 NA NA NA
GLU H:267 H:267 68.0 0.358 E -145.5 168.6 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 GLU A:267 A:267 90.0 0.474 E -153.8 166.7 90.0 0.474 0.0 HOH
 3.101
 OE2
 O
GLU B:267 B:267 70.0 0.368 E -149.3 169.5 70.0 0.368 0.0 HOH
 8.092
 C
 O
GLU C:267 C:267 87.0 0.458 E -166.3 171.7 NA NA NA
GLU D:267 D:267 58.0 0.305 E -150.0 175.2 NA NA NA
GLU E:267 E:267 86.0 0.453 E -160.2 161.0 NA NA NA
GLU F:267 F:267 69.0 0.363 E -146.8 167.5 NA NA NA
GLU G:267 G:267 103.0 0.542 E -156.6 179.6 NA NA NA
GLU H:267 H:267 76.0 0.4 E -161.6 159.7 NA NA NA
GLU I:267 I:267 62.0 0.326 E -153.3 -173.6 NA NA NA
GLU J:267 J:267 65.0 0.342 E -136.3 -170.1 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 GLU A:288 A:267 83.0 0.437 E -159.6 161.8 83.0 0.437 0.0 HOH
 2.494
 HG2
 O
GLU B:288 B:267 68.0 0.358 E -161.7 170.0 68.0 0.358 0.0 HOH
 7.085
 OE1
 O
GLU C:288 C:267 74.0 0.389 E -156.8 164.8 NA NA NA
GLU D:288 D:267 100.0 0.526 E -157.3 165.2 NA NA NA
GLU E:288 E:267 80.0 0.421 E -158.9 166.6 NA NA NA
GLU F:288 F:267 90.0 0.474 E -158.6 168.3 NA NA NA
GLU G:288 G:267 88.0 0.463 E -156.9 164.2 NA NA NA
GLU H:288 H:267 90.0 0.474 E -156.3 165.6 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 66.0 0.347 E -151.4 169.8 66.0 0.347 0.0
GLU B:289 B:267 70.0 0.368 E -151.7 171.7 70.0 0.368 0.0 HOH
 9.575
 OE2
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 GLU A:289 A:267 59.0 0.311 E -154.4 166.5 59.0 0.311 0.0 HOH
 4.112
 O
 O
GLU B:289 B:267 67.0 0.353 E -148.3 171.4 67.0 0.353 0.0 HOH
 4.756
 OE2
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 GLU A:289 A:267 91.0 0.479 E -166.3 151.6 91.0 0.479 0.0 HOH
 4.520
 OE2
 O
GLU B:289 B:267 65.0 0.342 E -169.8 153.4 65.0 0.342 0.0 HOH
 2.917
 OE1
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 72.0 0.379 E -149.7 167.6 72.0 0.379 0.0 HOH
 2.961
 HG2
 O
GLU B:289 B:267 73.0 0.384 E -147.3 168.2 73.0 0.384 0.0 HOH
 2.666
 OE2
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 67.0 0.353 E -151.3 167.9 67.0 0.353 0.0 HOH
 2.523
 OE2
 O
GLU B:289 B:267 64.0 0.337 E -147.2 166.4 64.0 0.337 0.0 HOH
 2.801
 O
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 94.0 0.495 E -146.9 164.3 94.0 0.495 0.0 HOH
 6.947
 O
 O
GLU B:289 B:267 63.0 0.332 E -144.4 164.6 63.0 0.332 0.0 HOH
 2.509
 OE2
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 GLU A:289 A:267 107.0 0.563 E -142.4 165.2 107.0 0.563 0.0 HOH
 2.966
 HA
 O
GLU B:289 B:267 97.0 0.511 E -150.1 163.3 97.0 0.511 0.0
GLU C:289 C:267 104.0 0.547 E -144.5 167.3 NA NA NA
GLU D:289 D:267 70.0 0.368 E -145.9 168.6 NA NA NA
GLU E:289 E:267 95.0 0.5 E -142.9 166.3 NA NA NA
GLU F:289 F:267 119.0 0.626 E -153.5 169.9 NA NA NA
GLU G:289 G:267 99.0 0.521 E -149.6 169.9 NA NA NA
GLU H:289 H:267 104.0 0.547 E -148.1 167.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 GLU A:302 A:302 91.0 0.479 E -130.0 152.7