Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557309 . C A CCDS5749.1:NM_000108.3:c.946Cga>Aga_NP_000099.2:p.316R>R Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
2011-05-04 ARG A:302 A:281 103.0 0.458 E -142.0 156.8 103.0 0.458 0.0 BME
FAD
HOH
7.530
7.594
5.582
N
O
NE
O1
O2A
O
ARG B:302 B:281 99.0 0.44 E -146.4 156.1 99.0 0.44 0.0 BME
FAD
7.263
7.709
N
O
C1
O2A
ARG C:302 C:281 101.0 0.449 E -138.4 152.5 NA NA NA
ARG D:302 D:281 107.0 0.476 E -134.7 157.3 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
2005-11-15 ARG A:281 A:281 95.0 0.422 E -118.8 161.9 95.0 0.422 0.0 FAD
HOH
7.200
5.771
O
CG
O2A
O
ARG B:281 B:281 91.0 0.404 E -135.5 155.2 91.0 0.404 0.0 FAD
HOH
7.415
2.932
O
NH2
O2A
O
ARG C:281 C:281 101.0 0.449 E -140.6 148.7 NA NA NA
ARG D:281 D:281 99.0 0.44 E -134.8 154.0 NA NA NA
ARG E:281 E:281 103.0 0.458 E -85.0 151.2 NA NA NA
ARG F:281 F:281 95.0 0.422 E -144.4 154.5 NA NA NA
ARG G:281 G:281 102.0 0.453 E -141.8 152.0 NA NA NA
ARG H:281 H:281 98.0 0.436 E -157.9 163.9 NA NA NA
ARG I:281 I:281 101.0 0.449 E -144.8 158.5 NA NA NA
ARG J:281 J:281 90.0 0.4 E -141.1 156.8 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
2019-11-20 ARG A:303 A:281 105.0 0.467 E -138.6 157.0 105.0 0.467 0.0 FAD
BTB
SO4
SO4
HOH
7.512
6.844
9.485
1.947
2.128
O
O
HA
HH12
HH11
O2A
H51
O4
O3
O
ARG B:303 B:281 102.0 0.453 E -139.6 156.6 102.0 0.453 0.0 FAD
BTB
SO4
HOH
7.608
6.635
9.543
2.915
O
O
HA
HD2
O2A
H71
O2
O
6i4t 1 P09622 99.79 0.0 X-RAY
2019-11-20 ARG A:303 A:281 105.0 0.467 E -140.7 153.2 105.0 0.467 0.0 FAD
SO4
HOH
7.468
9.694
2.350
O
HA
HH11
O2A
O4
O
ARG B:303 B:281 105.0 0.467 E -140.8 154.5 105.0 0.467 0.0 FAD
SO4
HOH
7.440
9.591
2.942
O
HA
HA
O2A
O2
O
1zmc 1 P09622 99.79 0.0 X-RAY
2005-06-28 ARG A:281 A:281 108.0 0.48 E -137.9 151.8 108.0 0.48 0.0 FAD
NAD
HOH
7.457
4.082
3.652
O
CB
CB
O2A
O7N
O
ARG B:281 B:281 105.0 0.467 E -137.5 154.8 105.0 0.467 0.0 FAD
NAD
HOH
7.510
8.080
4.084
O
N
CA
O2A
O1A
O
ARG C:281 C:281 104.0 0.462 E -135.5 158.8 NA NA NA
ARG D:281 D:281 104.0 0.462 E -142.8 156.4 NA NA NA
ARG E:281 E:281 104.0 0.462 E -139.5 153.2 NA NA NA
ARG F:281 F:281 99.0 0.44 E -130.8 158.6 NA NA NA
ARG G:281 G:281 101.0 0.449 E -129.7 154.4 NA NA NA
ARG H:281 H:281 91.0 0.404 E -140.2 154.7 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
2005-06-28 ARG A:281 A:281 106.0 0.471 E -143.2 155.3 106.0 0.471 0.0 FAD
NAI
HOH
7.399
6.865
3.880
O
N
CB
O2A
C5D
O
ARG B:281 B:281 109.0 0.484 E -136.8 155.0 109.0 0.484 0.0 FAD
NAI
HOH
7.256
6.859
3.612
O
N
CA
O2A
C5D
O
ARG C:281 C:281 106.0 0.471 E -143.9 156.5 NA NA NA
ARG D:281 D:281 97.0 0.431 E -144.6 158.3 NA NA NA
ARG E:281 E:281 106.0 0.471 E -135.2 159.0 NA NA NA
ARG F:281 F:281 99.0 0.44 E -137.2 157.1 NA NA NA
ARG G:281 G:281 101.0 0.449 E -136.5 156.1 NA NA NA
ARG H:281 H:281 97.0 0.431 E -138.6 158.2 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
2006-01-17 ARG A:281 A:281 107.0 0.476 E -142.2 155.3 107.0 0.476 0.0 FAD
HOH
7.410
3.842
O
CA
O2A
O
ARG B:281 B:281 103.0 0.458 E -148.5 155.3 103.0 0.458 0.0 FAD
HOH
7.308
5.565
O
C
O2A
O
ARG C:281 C:281 101.0 0.449 E -139.4 157.8 NA NA NA
ARG D:281 D:281 104.0 0.462 E -139.7 159.9 NA NA NA
ARG E:281 E:281 105.0 0.467 E -141.9 155.1 NA NA NA
ARG F:281 F:281 104.0 0.462 E -139.6 153.5 NA NA NA
ARG G:281 G:281 99.0 0.44 E -137.2 158.7 NA NA NA
ARG H:281 H:281 108.0 0.48 E -140.0 154.4 NA NA NA
ARG I:281 I:281 101.0 0.449 E -134.8 162.8 NA NA NA
ARG J:281 J:281 101.0 0.449 E -141.7 159.0 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
2018-05-16 ARG A:302 A:281 101.0 0.449 E -135.7 155.3 101.0 0.449 0.0 FAD
TRS
HOH
7.390
7.636
5.213
O
O
HA
O2A
C3
O
ARG B:302 B:281 102.0 0.453 E -136.9 156.0 102.0 0.453 0.0 FAD
HOH
7.532
5.254
O
HA
O2A
O
ARG C:302 C:281 103.0 0.458 E -135.9 154.6 NA NA NA
ARG D:302 D:281 106.0 0.471 E -135.2 155.6 NA NA NA
ARG E:302 E:281 101.0 0.449 E -135.6 155.4 NA NA NA
ARG F:302 F:281 105.0 0.467 E -136.1 153.7 NA NA NA
ARG G:302 G:281 105.0 0.467 E -133.7 152.6 NA NA NA
ARG H:302 H:281 98.0 0.436 E -135.1 154.3 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
2019-11-20 ARG A:303 A:281 98.0 0.436 E -139.5 153.7 98.0 0.436 0.0 FAD
SO4
HOH
7.445
9.589
1.990
O
HA
HH11
O2A
O4
O
ARG B:303 B:281 99.0 0.44 E -141.1 154.2 99.0 0.44 0.0 FAD
SO4
HOH
7.497
9.465
2.798
O
HA
HA
O2A
O1
O
5j5z 1 P09622 99.79 0.0 X-RAY
2017-11-15 ARG A:303 A:281 104.0 0.462 E -134.7 162.5 104.0 0.462 0.0 FAD
HOH
7.522
2.606
O
NH1
O2A
O
ARG B:303 B:281 98.0 0.436 E -143.2 159.2 98.0 0.436 0.0 FAD
HOH
7.599
2.699
O
NH1
O2A
O
6hg8 1 P09622 99.79 0.0 X-RAY
2019-09-04 ARG A:303 A:281 106.0 0.471 E -141.8 153.5 106.0 0.471 0.0 FAD
HOH
7.503
2.631
O
NH1
O2A
O
ARG B:303 B:281 94.0 0.418 E -147.5 153.6 94.0 0.418 0.0 FAD
SO4
HOH
7.489
8.629
2.881
O
N
NH1
O2A
O1
O
6i4r 1 P09622 99.79 0.0 X-RAY
2019-11-20 ARG A:303 A:281 103.0 0.458 E -144.1 155.8 103.0 0.458 0.0 FAD
SO4
BTB
HOH
7.533
9.537
6.797
2.939
O
HA
O
HB2
O2A
O4
H51
O
ARG B:303 B:281 100.0 0.444 E -144.6 155.3 100.0 0.444 0.0 FAD
SO4
BTB
HOH
7.594
9.518
6.903
2.174
O
HA
O
HH11
O2A
O2
H72
O
6i4p 1 P09622 99.79 0.0 X-RAY
2019-11-20 ARG A:303 A:281 106.0 0.471 E -143.1 156.1 106.0 0.471 0.0 FAD
SO4
BTB
HOH
7.529
9.588
6.857
2.049
O
HA
O
HH11
O2A
O4
H82
O
ARG B:303 B:281 99.0 0.44 E -144.8 155.8 99.0 0.44 0.0 FAD
SO4
BTB
HOH
7.592
9.344
6.830
2.155
O
HA
O
HH11
O2A
O2
H72
O
6i4s 1 P09622 99.79 0.0 X-RAY
2019-11-20 ARG A:303 A:281 105.0 0.467 E -140.3 153.0 105.0 0.467 0.0 FAD
SO4
SO4
HOH
7.423
9.533
2.008
2.181
O
HA
HH12
HH11
O2A
O4
O1
O
ARG B:303 B:281 99.0 0.44 E -142.6 155.9 99.0 0.44 0.0 FAD
SO4
SO4
HOH
7.457
9.552
6.700
2.094
O
HA
H
HH11
O2A
O2
O4
O
6i4z 1 P09622 99.79 0.0 X-RAY
2019-11-20 ARG A:303 A:281 103.0 0.458 E -135.6 151.7 103.0 0.458 0.0 FAD
SO4
HOH
7.485
9.434
3.283
O
HA
HB2
O2A
O1
O
ARG B:303 B:281 107.0 0.476 E -141.4 153.0 107.0 0.476 0.0 FAD
SO4
7.826
9.125
O
HA
O2A
O3
ARG C:303 C:281 91.0 0.404 E -138.2 150.8 NA NA NA
ARG D:303 D:281 94.0 0.418 E -135.6 153.5 NA NA NA
ARG E:303 E:281 108.0 0.48 E -137.8 153.9 NA NA NA
ARG F:303 F:281 106.0 0.471 E -136.3 152.3 NA NA NA
ARG G:303 G:281 104.0 0.462 E -139.0 154.4 NA NA NA
ARG H:303 H:281 95.0 0.422 E -138.1 155.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 ARG A:316 A:316 103.0 0.458 E -131.4 150.4