Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 107557790 . T A CCDS5749.1:NM_000108.3:c.1119tgT>tgA_NP_000099.2:p.373C>* Homo sapiens dihydrolipoamide dehydrogenase (DLD), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3rnm 1 P09622 99.37 0.0 X-RAY
 2011-05-04 CYS A:359 A:338 0.0 0.0 H -60.3 -52.3 0.0 0.0 0.0 HOH
 2.505
 O
 O
CYS B:359 B:338 0.0 0.0 H -67.7 -55.8 0.0 0.0 0.0
CYS C:359 C:338 0.0 0.0 H -57.2 -50.5 NA NA NA
CYS D:359 D:338 0.0 0.0 H -56.9 -48.0 NA NA NA
1zy8 1 P09622 100.0 0.0 X-RAY
 2005-11-15 CYS A:338 A:338 0.0 0.0 H -52.9 -51.7 0.0 0.0 0.0 HOH
 2.852
 O
 O
CYS B:338 B:338 0.0 0.0 H -70.4 -53.4 0.0 0.0 0.0 HOH
 3.047
 O
 O
CYS C:338 C:338 0.0 0.0 H -44.4 -63.3 NA NA NA
CYS D:338 D:338 0.0 0.0 H -61.7 -50.6 NA NA NA
CYS E:338 E:338 0.0 0.0 H -64.1 -46.3 NA NA NA
CYS F:338 F:338 0.0 0.0 H -55.9 -65.8 NA NA NA
CYS G:338 G:338 0.0 0.0 H -57.2 -58.8 NA NA NA
CYS H:338 H:338 0.0 0.0 H -68.6 -42.9 NA NA NA
CYS I:338 I:338 1.0 0.007 H -72.8 -50.0 NA NA NA
CYS J:338 J:338 0.0 0.0 H -89.2 -34.0 NA NA NA
6i4q 1 P09622 100.0 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -59.3 -49.8 0.0 0.0 0.0 HOH
 2.794
 O
 O
CYS B:360 B:338 0.0 0.0 H -59.5 -51.2 0.0 0.0 0.0 HOH
 2.934
 O
 O
6i4t 1 P09622 99.79 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -56.4 -47.7 0.0 0.0 0.0 1PE
HOH
 6.637
2.749
 H
O
 H162
O
CYS B:360 B:338 0.0 0.0 H -58.6 -47.5 0.0 0.0 0.0 HOH
 2.911
 O
 O
1zmc 1 P09622 99.79 0.0 X-RAY
 2005-06-28 CYS A:338 A:338 0.0 0.0 H -64.7 -44.7 0.0 0.0 0.0 HOH
 2.800
 O
 O
CYS B:338 B:338 0.0 0.0 H -74.9 -50.0 0.0 0.0 0.0 HOH
 2.792
 O
 O
CYS C:338 C:338 0.0 0.0 H -77.1 -44.4 NA NA NA
CYS D:338 D:338 0.0 0.0 H -60.6 -49.0 NA NA NA
CYS E:338 E:338 0.0 0.0 H -77.9 -38.0 NA NA NA
CYS F:338 F:338 0.0 0.0 H -58.7 -52.2 NA NA NA
CYS G:338 G:338 0.0 0.0 H -64.6 -48.1 NA NA NA
CYS H:338 H:338 0.0 0.0 H -64.6 -44.6 NA NA NA
1zmd 1 P09622 99.79 0.0 X-RAY
 2005-06-28 CYS A:338 A:338 0.0 0.0 H -62.2 -48.3 0.0 0.0 0.0 HOH
 2.772
 O
 O
CYS B:338 B:338 0.0 0.0 H -62.3 -50.4 0.0 0.0 0.0 HOH
 2.634
 O
 O
CYS C:338 C:338 0.0 0.0 H -67.3 -45.9 NA NA NA
CYS D:338 D:338 0.0 0.0 H -62.4 -47.1 NA NA NA
CYS E:338 E:338 0.0 0.0 H -65.1 -50.2 NA NA NA
CYS F:338 F:338 0.0 0.0 H -60.0 -49.1 NA NA NA
CYS G:338 G:338 0.0 0.0 H -64.7 -45.9 NA NA NA
CYS H:338 H:338 0.0 0.0 H -63.0 -52.4 NA NA NA
2f5z 1 P09622 99.79 0.0 X-RAY
 2006-01-17 CYS A:338 A:338 1.0 0.007 H -65.7 -48.2 1.0 0.007 0.0 HOH
 7.722
 N
 O
CYS B:338 B:338 1.0 0.007 H -67.9 -52.3 1.0 0.007 0.0
CYS C:338 C:338 0.0 0.0 H -64.6 -41.8 NA NA NA
CYS D:338 D:338 0.0 0.0 H -65.1 -46.9 NA NA NA
CYS E:338 E:338 0.0 0.0 H -65.0 -48.6 NA NA NA
CYS F:338 F:338 0.0 0.0 H -65.3 -51.5 NA NA NA
CYS G:338 G:338 0.0 0.0 H -62.0 -57.0 NA NA NA
CYS H:338 H:338 0.0 0.0 H -64.0 -50.3 NA NA NA
CYS I:338 I:338 0.0 0.0 H -61.2 -50.4 NA NA NA
CYS J:338 J:338 0.0 0.0 H -69.0 -45.3 NA NA NA
5nhg 1 P09622 100.0 0.0 X-RAY
 2018-05-16 CYS A:359 A:338 0.0 0.0 H -62.3 -48.9 0.0 0.0 0.0 HOH
 2.619
 O
 O
CYS B:359 B:338 0.0 0.0 H -60.4 -48.2 0.0 0.0 0.0 HOH
 2.850
 O
 O
CYS C:359 C:338 1.0 0.007 H -61.7 -48.4 NA NA NA
CYS D:359 D:338 0.0 0.0 H -61.5 -48.7 NA NA NA
CYS E:359 E:338 0.0 0.0 H -61.5 -45.6 NA NA NA
CYS F:359 F:338 0.0 0.0 H -62.6 -47.8 NA NA NA
CYS G:359 G:338 0.0 0.0 H -60.3 -49.6 NA NA NA
CYS H:359 H:338 1.0 0.007 H -62.0 -45.2 NA NA NA
6i4u 1 P09622 99.79 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -58.2 -48.6 0.0 0.0 0.0 1PE
HOH
 6.921
2.709
 H
O
 H222
O
CYS B:360 B:338 0.0 0.0 H -60.0 -51.5 0.0 0.0 0.0 HOH
 2.884
 O
 O
5j5z 1 P09622 99.79 0.0 X-RAY
 2017-11-15 CYS A:360 A:338 0.0 0.0 H -59.4 -45.0 0.0 0.0 0.0 GOL
HOH
 8.321
2.793
 N
O
 O1
O
CYS B:360 B:338 0.0 0.0 H -54.7 -53.0 0.0 0.0 0.0 HOH
 2.731
 O
 O
6hg8 1 P09622 99.79 0.0 X-RAY
 2019-09-04 CYS A:360 A:338 0.0 0.0 H -55.3 -51.9 0.0 0.0 0.0 HOH
 2.734
 O
 O
CYS B:360 B:338 0.0 0.0 H -58.6 -49.5 0.0 0.0 0.0 HOH
 2.854
 O
 O
6i4r 1 P09622 99.79 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -60.9 -48.3 0.0 0.0 0.0 HOH
 2.826
 O
 O
CYS B:360 B:338 0.0 0.0 H -62.5 -49.4 0.0 0.0 0.0 HOH
 2.880
 O
 O
6i4p 1 P09622 99.79 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -62.2 -47.8 0.0 0.0 0.0 HOH
 2.828
 O
 O
CYS B:360 B:338 0.0 0.0 H -60.8 -48.8 0.0 0.0 0.0 HOH
 2.879
 HA
 O
6i4s 1 P09622 99.79 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -59.1 -50.2 0.0 0.0 0.0 HOH
 2.805
 O
 O
CYS B:360 B:338 0.0 0.0 H -60.2 -51.9 0.0 0.0 0.0 HOH
 2.791
 O
 O
6i4z 1 P09622 99.79 0.0 X-RAY
 2019-11-20 CYS A:360 A:338 0.0 0.0 H -60.6 -46.9 0.0 0.0 0.0 HOH
 6.801
 O
 O
CYS B:360 B:338 0.0 0.0 H -60.7 -46.4 0.0 0.0 0.0 HOH
 2.426
 O
 O
CYS C:360 C:338 1.0 0.007 H -60.8 -45.9 NA NA NA
CYS D:360 D:338 0.0 0.0 H -60.6 -48.1 NA NA NA
CYS E:360 E:338 1.0 0.007 H -60.5 -48.0 NA NA NA
CYS F:360 F:338 0.0 0.0 H -60.0 -47.7 NA NA NA
CYS G:360 G:338 0.0 0.0 H -60.9 -46.6 NA NA NA
CYS H:360 H:338 0.0 0.0 H -59.6 -47.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p09622-f1 1 P09622 100.0 0.0 CYS A:373 A:373 0.0 0.0 H -61.7 -48.3