Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 127229166 . A C CCDS34745.1:NM_001662.3:c.97Atc>Ctc_NP_001653.1:p.33I>L Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2b6h 1 P84085 99.43 9e-130 X-RAY
 2005-10-11 ILE A:45 A:33 1.0 0.006 H -64.6 -51.2 1.0 0.006 0.0 CL
GDP
HOH
 9.763
5.085
5.049
 O
N
N
 CL
O2A
O
1z6x 1 P18085 90.0 4e-123 X-RAY
 2005-04-12 ILE A:33 A:33 1.0 0.006 H -72.0 -42.7 1.0 0.006 0.0 MG
GDP
HOH
 8.773
5.341
6.276
 N
N
O
 MG
O1A
O
ILE B:33 B:33 1.0 0.006 H -59.5 -55.6 NA NA NA
3aq4 1 P36397 80.56 4e-110 X-RAY
 2011-01-26 ILE A:36 A:33 1.0 0.006 H -60.5 -47.8 1.0 0.006 0.0 MG
GDP
HOH
 8.143
5.055
5.063
 N
N
N
 MG
O1A
O
ILE B:36 B:33 2.0 0.011 H -59.8 -47.6 NA NA NA
1r8q 1 P84080 81.92 3e-108 X-RAY
 2004-01-20 ILE A:33 A:33 1.0 0.006 H -58.8 -45.9 1.0 0.006 0.0 MG
G3D
HOH
 8.130
5.030
6.147
 N
N
C
 MG
O1A
O
ILE C:33 B:33 1.0 0.006 H -59.3 -48.5 NA NA NA
1rrf 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 ILE A:33 A:33 2.0 0.011 H -67.8 -49.1 2.0 0.011 0.0 MG
GDP
 8.405
5.315
 N
N
 MG
O1A
1rrg 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 ILE A:33 A:33 2.0 0.011 H -67.0 -44.7 2.0 0.011 0.0 MG
GDP
HOH
 9.067
5.243
6.139
 N
N
O
 MG
O1A
O
ILE B:33 B:33 0.0 0.0 H -63.0 -49.2 0.0 0.0 0.0 MG
GDP
HOH
 8.760
5.001
5.903
 N
N
O
 MG
O1A
O
1hur 1 P84077 81.82 3e-107 X-RAY
 1995-07-10 ILE A:32 A:33 2.0 0.011 H -68.1 -41.1 2.0 0.011 0.0 MG
GDP
HOH
 8.599
5.187
6.052
 N
N
O
 MG
O1A
O
ILE B:32 B:33 2.0 0.011 H -57.0 -50.0 2.0 0.011 0.0 MG
GDP
HOH
 8.674
5.016
5.133
 N
N
N
 MG
O1A
O
6ii6 2 P61204 83.13 4e-103 X-RAY
 2019-08-07 ILE C:21 C:33 1.0 0.006 H -57.7 -46.7 1.0 0.006 0.0 GTP
MG
HOH
 5.018
8.053
4.842
 N
N
N
 O2A
MG
O
ILE D:21 D:33 1.0 0.006 H -60.7 -50.9 NA NA NA
3o47 1 Q8N6T3,P84077 84.94 4e-103 X-RAY
 2010-08-11 ILE A:181 A:163 2.0 0.011 H -59.7 -54.0 2.0 0.011 0.0 GDP
 5.151
 N
 O1A
ILE B:181 B:163 1.0 0.006 H -61.2 -50.0 NA NA NA
7mge 4 P84077 83.54 1e-102 EM
 2021-06-23 ILE D:19 E:33 14.0 0.08 H -62.6 -44.8 14.0 0.08 0.0 GDP
BEF
MG
 5.947
7.995
8.742
 CG1
N
N
 N7
F2
MG
7dn8 2 P84077 83.54 3e-102 X-RAY
 2021-12-15 ILE B:21 D:33 0.0 0.0 H -66.7 -47.1 0.0 0.0 0.0 MG
GDP
HOH
 8.200
5.247
7.649
 N
N
O
 MG
O1A
O
ILE D:21 B:33 0.0 0.0 H -66.7 -46.6 NA NA NA
ILE F:21 F:33 0.0 0.0 H -66.7 -46.9 NA NA NA
ILE H:21 H:33 0.0 0.0 H -66.8 -46.7 NA NA NA
1r8s 1 P84080 85.62 4e-102 X-RAY
 2004-01-20 ILE A:16 A:33 0.0 0.0 H -59.9 -49.1 0.0 0.0 0.0 GDP
HOH
 4.995
4.897
 N
N
 O1A
O
1re0 1 P32889 85.62 4e-102 X-RAY
 2003-12-16 ILE A:16 A:33 1.0 0.006 H -63.2 -42.1 1.0 0.006 0.0 MG
GDP
HOH
 8.038
4.818
8.338
 N
N
N
 MG
O1A
O
1s9d 1 P84080 85.62 4e-102 X-RAY
 2004-02-10 ILE A:16 A:33 0.0 0.0 H -63.5 -42.9 0.0 0.0 0.0 MG
GDP
HOH
 8.093
5.001
4.716
 N
N
N
 MG
O1A
O
1u81 1 P84077 85.62 4e-102 NMR
 2004-10-05 ILE A:16 A:33 6.0 0.034 H -44.6 -45.6 6.0 0.034 0.0 GDP
 5.169
 H
 O1A
4c0a 2 P84080 85.62 4e-102 X-RAY
 2013-09-25 ILE C:16 C:33 0.0 0.0 H -63.5 -47.3 NA NA NA
ILE D:16 D:33 0.0 0.0 H -62.9 -47.9 NA NA NA
ILE G:16 G:33 0.0 0.0 H -63.7 -47.1 0.0 0.0 0.0 G3D
 4.543
 N
 O2A
ILE H:16 H:33 0.0 0.0 H -63.6 -47.2 NA NA NA
6fae 2 P84077 84.57 2e-101 X-RAY
 2018-01-17 ILE B:65 B:33 3.0 0.017 H -58.7 -46.0 3.0 0.017 0.0 HOH
 6.325
 N
 O
6cri 3 P84077 84.47 3e-101 EM
 2018-08-01 ILE C:17 C:33 0.0 0.0 H -79.3 -7.7 0.0 0.0 0.0 GTP
MG
 5.292
7.960
 N
N
 O1A
MG
ILE E:17 H:33 0.0 0.0 H -62.1 -41.0 0.0 0.0 0.0 GTP
MG
 4.904
7.771
 N
N
 O1A
MG
ILE K:17 K:33 0.0 0.0 H -77.6 -11.2 0.0 0.0 0.0 GTP
MG
 5.356
8.025
 N
N
 O1A
MG
ILE M:17 U:33 0.0 0.0 H -64.2 -44.5 0.0 0.0 0.0 GTP
MG
 4.886
7.741
 N
N
 O1A
MG
ILE S:17 L:33 0.0 0.0 H -85.2 -7.1 0.0 0.0 0.0 GTP
MG
 5.446
8.064
 N
N
 O1A
MG
ILE U:17 V:33 0.0 0.0 H -65.4 -40.3 0.0 0.0 0.0 GTP
MG
 5.067
7.841
 N
N
 O1A
MG
7dn9 2 P84077 84.47 3e-101 X-RAY
 2021-12-15 ILE B:17 B:33 0.0 0.0 H -62.1 -41.7 0.0 0.0 0.0 MG
GDP
 9.557
5.439
 N
N
 MG
O1A
ILE D:17 D:33 0.0 0.0 H -62.6 -41.8 NA NA NA
ILE F:17 F:33 0.0 0.0 H -62.4 -41.9 NA NA NA
ILE H:17 H:33 0.0 0.0 H -62.6 -42.0 NA NA NA
4hmy 5 P84077 84.47 4e-101 X-RAY
 2013-03-06 ILE E:24 C:33 7.0 0.04 H -57.1 -58.4 7.0 0.04 0.0 GTP
MG
 4.855
8.119
 N
N
 O1A
MG
6cm9 3 P84077 84.47 5e-101 EM
 2018-08-08 ILE D:45 C:33 1.0 0.006 H -72.4 -20.7 1.0 0.006 0.0 GTP
MG
 5.752
8.450
 N
N
 O1A
MG
ILE F:45 H:33 0.0 0.0 H -63.3 -40.8 0.0 0.0 0.0 GTP
MG
 5.459
7.684
 N
N
 O1A
MG
6d83 3 P84077 84.47 5e-101 EM
 2018-08-08 ILE D:45 C:33 0.0 0.0 H -72.2 -22.2 0.0 0.0 0.0 GTP
MG
 5.220
8.257
 N
N
 O1A
MG
ILE F:45 H:33 0.0 0.0 H -62.9 -41.8 0.0 0.0 0.0 GTP
MG
 5.576
7.665
 N
N
 O1A
MG
6d84 3 P84077 84.47 5e-101 EM
 2018-08-08 ILE D:45 C:33 0.0 0.0 H -75.2 -19.0 0.0 0.0 0.0 GTP
MG
 5.162
8.040
 N
N
 O1A
MG
ILE F:45 H:33 0.0 0.0 H -61.8 -39.9 0.0 0.0 0.0 GTP
MG
 5.600
7.709
 N
N
 O1A
MG
ILE L:45 I:33 0.0 0.0 H -74.7 -20.1 0.0 0.0 0.0 GTP
MG
 5.160
8.170
 N
N
 O2A
MG
ILE N:45 N:33 0.0 0.0 H -63.0 -40.9 0.0 0.0 0.0 GTP
MG
 5.676
7.738
 N
N
 O2A
MG
6dff 3 P84077 84.47 5e-101 EM
 2018-08-08 ILE D:45 C:33 2.0 0.011 H -75.4 -21.6 2.0 0.011 0.0 GTP
MG
 4.959
8.411
 N
N
 O1A
MG
ILE F:45 H:33 0.0 0.0 H -63.2 -39.5 0.0 0.0 0.0 GTP
MG
 5.294
7.806
 N
N
 O1A
MG
1j2j 1 Q8BSL7 85.0 6e-101 X-RAY
 2003-05-06 ILE A:18 A:33 1.0 0.006 H -62.2 -42.7 1.0 0.006 0.0 MG
GTP
HOH
 8.037
5.089
3.464
 N
N
CG1
 MG
O1A
O
1o3y 1 P84078 85.0 6e-101 X-RAY
 2003-05-20 ILE A:18 A:33 0.0 0.0 H -63.5 -44.8 0.0 0.0 0.0 MG
GTP
HOH
 8.152
5.049
4.906
 N
N
N
 MG
O1A
O
ILE B:18 B:33 0.0 0.0 H -63.2 -43.7 NA NA NA
2j59 1 P84078 85.0 6e-101 X-RAY
 2007-02-20 ILE A:18 A:33 1.0 0.006 H -63.8 -46.3 1.0 0.006 0.0 GTP
MG
HOH
 5.037
8.043
4.778
 N
N
N
 O1A
MG
O
ILE B:18 B:33 1.0 0.006 H -56.4 -49.3 NA NA NA
ILE C:18 C:33 1.0 0.006 H -56.4 -47.2 NA NA NA
ILE D:18 D:33 1.0 0.006 H -61.4 -44.3 NA NA NA
ILE E:18 E:33 1.0 0.006 H -57.8 -50.2 NA NA NA
ILE F:18 F:33 2.0 0.011 H -63.9 -45.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84085-f1 1 P84085 100.0 5e-135 ILE A:33 A:33 0.0 0.0 H -58.9 -47.5
af-p18085-f1 1 P18085 90.0 2e-123 ILE A:33 A:33 0.0 0.0 H -59.4 -47.6
af-p84077-f1 1 P84077 81.92 1e-108 ILE A:33 A:33 0.0 0.0 H -59.5 -48.3