Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 127229176 . A C CCDS34745.1:NM_001662.3:c.107aAa>aCa_NP_001653.1:p.36K>T Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2b6h 1 P84085 99.43 9e-130 X-RAY
 2005-10-11 LYS A:48 A:36 65.0 0.325 H -66.8 -25.0 65.0 0.325 0.0 CL
SO4
GDP
HOH
 5.024
8.821
8.321
2.549
 O
O
CG
O
 CL
O3
N7
O
1z6x 1 P18085 90.0 4e-123 X-RAY
 2005-04-12 LYS A:36 A:36 72.0 0.36 H -75.7 -21.2 72.0 0.36 0.0 GDP
HOH
 7.602
3.866
 CE
CA
 N7
O
LYS B:36 B:36 62.0 0.31 H -66.7 -21.7 NA NA NA
3aq4 1 P36397 80.56 4e-110 X-RAY
 2011-01-26 LYS A:39 A:36 76.0 0.38 H -64.2 -27.2 76.0 0.38 0.0 GDP
HOH
 8.472
3.187
 CE
NZ
 N7
O
LYS B:39 B:36 77.0 0.385 H -68.5 -27.6 NA NA NA
1r8q 1 P84080 81.92 3e-108 X-RAY
 2004-01-20 LYS A:36 A:36 76.0 0.38 H -69.5 -39.5 76.0 0.38 0.0 G3D
HOH
 8.189
2.732
 CE
O
 N7
O
LYS C:36 B:36 85.0 0.425 H -66.0 -37.3 NA NA NA
1rrf 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 LYS A:36 A:36 52.0 0.26 H -66.1 -30.7 52.0 0.26 0.0 GDP
 8.365
 NZ
 N7
1rrg 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 LYS A:36 A:36 60.0 0.3 H -66.3 -28.7 58.0 0.29 0.01 B:P84079:0.01
 GDP
HOH
 7.946
3.607
 CG
NZ
 N7
O
LYS B:36 B:36 58.0 0.29 H -68.3 -37.5 51.0 0.255 0.035 A:P84079:0.035
 GDP
HOH
 7.782
2.670
 CG
NZ
 N7
O
1hur 1 P84077 81.82 3e-107 X-RAY
 1995-07-10 LYS A:35 A:36 82.0 0.41 H -62.0 -30.4 81.0 0.405 0.005 B:P84077:0.005
 GDP
HOH
 8.101
3.322
 CG
CE
 N7
O
LYS B:35 B:36 73.0 0.365 H -59.8 -31.7 73.0 0.365 0.0 GDP
HOH
 7.950
3.392
 CG
CG
 N7
O
6ii6 2 P61204 83.13 4e-103 X-RAY
 2019-08-07 LYS C:24 C:36 49.0 0.245 H -57.9 -47.3 49.0 0.245 0.0 GTP
HOH
 8.368
3.386
 CB
N
 N7
O
LYS D:24 D:36 45.0 0.225 H -67.9 -48.4 NA NA NA
3o47 1 Q8N6T3,P84077 84.94 4e-103 X-RAY
 2010-08-11 LYS A:184 A:166 95.0 0.475 H -61.8 -28.4 81.0 0.405 0.07 A:Q8N6T3+P84077:0.07
 GDP
 8.357
 CG
 N7
LYS B:184 B:166 91.0 0.455 H -59.9 -31.7 NA NA NA
7mge 4 P84077 83.54 1e-102 EM
 2021-06-23 LYS D:22 E:36 37.0 0.185 H -58.0 -45.8 37.0 0.185 0.0 GDP
 7.964
 CG
 N7
7dn8 2 P84077 83.54 3e-102 X-RAY
 2021-12-15 LYS B:24 D:36 40.0 0.2 H -73.2 -39.0 40.0 0.2 0.0 GDP
HOH
 8.373
3.424
 CB
O
 N7
O
LYS D:24 B:36 41.0 0.205 H -73.2 -39.2 NA NA NA
LYS F:24 F:36 35.0 0.175 H -73.5 -39.1 NA NA NA
LYS H:24 H:36 40.0 0.2 H -73.5 -39.2 NA NA NA
1r8s 1 P84080 85.62 4e-102 X-RAY
 2004-01-20 LYS A:19 A:36 50.0 0.25 H -62.7 -42.5 50.0 0.25 0.0 GDP
HOH
 7.314
2.824
 NZ
NZ
 N7
O
1re0 1 P32889 85.62 4e-102 X-RAY
 2003-12-16 LYS A:19 A:36 83.0 0.415 H -59.5 -49.3 83.0 0.415 0.0 GDP
 8.313
 CG
 N7
1s9d 1 P84080 85.62 4e-102 X-RAY
 2004-02-10 LYS A:19 A:36 71.0 0.355 H -61.2 -39.5 71.0 0.355 0.0 GDP
HOH
 8.239
2.628
 NZ
NZ
 N7
O
1u81 1 P84077 85.62 4e-102 NMR
 2004-10-05 LYS A:19 A:36 73.0 0.365 H -79.7 -61.8 73.0 0.365 0.0 GDP
 7.380
 HZ1
 N7
4c0a 2 P84080 85.62 4e-102 X-RAY
 2013-09-25 LYS C:19 C:36 57.0 0.285 H -67.6 -43.8 NA NA NA
LYS D:19 D:36 54.0 0.27 H -67.3 -44.1 NA NA NA
LYS G:19 G:36 70.0 0.35 H -67.6 -44.2 70.0 0.35 0.0 G3D
 8.365
 CG
 N7
LYS H:19 H:36 71.0 0.355 H -67.6 -44.0 NA NA NA
6fae 2 P84077 84.57 2e-101 X-RAY
 2018-01-17 LYS B:68 B:36 72.0 NA T -82.1 -0.8 72.0 NA NA HOH
 3.327
 C
 O
6cri 3 P84077 84.47 3e-101 EM
 2018-08-01 LYS C:20 C:36 51.0 0.255 H -74.0 -40.9 51.0 0.255 0.0 GTP
 8.901
 N
 O1A
LYS E:20 H:36 42.0 0.21 H -84.6 -32.2 42.0 0.21 0.0 GTP
 8.502
 N
 O1A
LYS K:20 K:36 44.0 0.22 H -70.5 -35.5 44.0 0.22 0.0 GTP
 8.904
 N
 O1A
LYS M:20 U:36 38.0 0.19 H -82.0 -35.0 38.0 0.19 0.0 GTP
 8.498
 N
 O1A
LYS S:20 L:36 51.0 0.255 H -74.2 -39.2 51.0 0.255 0.0 GTP
 8.947
 N
 O1A
LYS U:20 V:36 38.0 0.19 H -95.6 -32.4 38.0 0.19 0.0 GTP
 8.597
 N
 O1A
7dn9 2 P84077 84.47 3e-101 X-RAY
 2021-12-15 LYS B:20 B:36 43.0 0.215 H -72.0 -36.5 15.0 0.075 0.14 A:Q8ZPY9:0.14
 GDP
 8.374
 CB
 N7
LYS D:20 D:36 42.0 0.21 H -71.7 -35.8 NA NA NA
LYS F:20 F:36 42.0 0.21 H -72.4 -36.7 NA NA NA
LYS H:20 H:36 43.0 0.215 H -72.4 -36.0 NA NA NA
4hmy 5 P84077 84.47 4e-101 X-RAY
 2013-03-06 LYS E:27 C:36 51.0 0.255 H -76.2 -32.5 51.0 0.255 0.0 GTP
 8.977
 N
 O1A
6cm9 3 P84077 84.47 5e-101 EM
 2018-08-08 LYS D:48 C:36 51.0 0.255 H -68.6 -42.2 51.0 0.255 0.0 GTP
 9.177
 N
 O1A
LYS F:48 H:36 34.0 0.17 H -91.1 -32.6 34.0 0.17 0.0 GTP
 8.283
 CG
 O6
6d83 3 P84077 84.47 5e-101 EM
 2018-08-08 LYS D:48 C:36 45.0 0.225 H -67.9 -38.9 45.0 0.225 0.0 GTP
 8.878
 N
 O1A
LYS F:48 H:36 33.0 0.165 H -80.9 -32.1 33.0 0.165 0.0 GTP
 7.925
 CG
 O6
6d84 3 P84077 84.47 5e-101 EM
 2018-08-08 LYS D:48 C:36 39.0 0.195 H -71.2 -34.4 39.0 0.195 0.0 GTP
 8.772
 N
 O1A
LYS F:48 H:36 23.0 0.115 H -81.2 -31.1 23.0 0.115 0.0 GTP
 8.046
 CG
 O6
LYS L:48 I:36 40.0 0.2 H -71.1 -36.3 40.0 0.2 0.0 GTP
 8.665
 N
 O2A
LYS N:48 N:36 25.0 0.125 H -89.6 -32.5 25.0 0.125 0.0 GTP
 8.223
 CG
 O6
6dff 3 P84077 84.47 5e-101 EM
 2018-08-08 LYS D:48 C:36 47.0 0.235 H -75.6 -39.7 47.0 0.235 0.0 GTP
 8.542
 N
 O1A
LYS F:48 H:36 37.0 0.185 H -79.0 -38.1 37.0 0.185 0.0 GTP
 8.272
 CB
 N7
1j2j 1 Q8BSL7 85.0 6e-101 X-RAY
 2003-05-06 LYS A:21 A:36 40.0 0.2 H -65.2 -41.6 40.0 0.2 0.0 GTP
HOH
 8.373
2.651
 CB
O
 N7
O
1o3y 1 P84078 85.0 6e-101 X-RAY
 2003-05-20 LYS A:21 A:36 55.0 0.275 H -66.7 -46.4 55.0 0.275 0.0 GTP
HOH
 8.388
2.840
 CB
NZ
 N7
O
LYS B:21 B:36 40.0 0.2 H -64.8 -42.8 NA NA NA
2j59 1 P84078 85.0 6e-101 X-RAY
 2007-02-20 LYS A:21 A:36 44.0 0.22 H -62.5 -43.3 44.0 0.22 0.0 GTP
HOH
 8.347
2.712
 CB
O
 N7
O
LYS B:21 B:36 46.0 0.23 H -61.6 -43.9 NA NA NA
LYS C:21 C:36 46.0 0.23 H -58.9 -44.7 NA NA NA
LYS D:21 D:36 43.0 0.215 H -61.3 -42.9 NA NA NA
LYS E:21 E:36 45.0 0.225 H -58.8 -45.9 NA NA NA
LYS F:21 F:36 46.0 0.23 H -62.6 -44.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84085-f1 1 P84085 100.0 5e-135 LYS A:36 A:36 34.0 0.17 H -60.2 -42.1
af-p18085-f1 1 P18085 90.0 2e-123 LYS A:36 A:36 36.0 0.18 H -60.2 -41.7
af-p84077-f1 1 P84077 81.92 1e-108 LYS A:36 A:36 32.0 0.16 H -58.9 -43.4