Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 127229638 . A C CCDS34745.1:NM_001662.3:c.248cAg>cCg_NP_001653.1:p.83Q>P Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2b6h 1 P84085 99.43 9e-130 X-RAY
 2005-10-11 GLN A:95 A:83 108.0 NA H -53.7 -36.7 108.0 NA NA UNX
HOH
 6.269
4.152
 N
O
 UNK
O
1z6x 1 P18085 90.0 4e-123 X-RAY
 2005-04-12 GLN A:83 A:83 128.0 0.711 S -58.4 -76.9 128.0 0.711 0.0 HOH
 5.761
 O
 O
GLN B:83 B:83 123.0 0.683 H -45.9 -52.7 NA NA NA
3aq4 1 P36397 80.56 4e-110 X-RAY
 2011-01-26 GLN A:86 A:83 153.0 0.85 G -62.2 -30.9 153.0 0.85 0.0 HOH
 2.563
 NE2
 O
GLN B:86 NA:NA DO NA DO DO DO NA NA NA
1r8q 1 P84080 81.92 3e-108 X-RAY
 2004-01-20 GLN A:83 A:83 135.0 0.75 T -65.3 -39.5 135.0 0.75 0.0 HOH
 6.154
 NE2
 O
GLN C:83 B:83 86.0 0.478 S -60.6 147.1 NA NA NA
1rrf 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 GLN A:83 A:83 49.0 NA T -29.9 -123.9 49.0 NA NA
1rrg 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 GLN A:83 A:83 127.0 0.706 T -67.3 13.1 127.0 0.706 0.0 HOH
 3.061
 NE2
 O
GLN B:83 B:83 112.0 0.622 T -72.9 49.5 112.0 0.622 0.0 HOH
 3.867
 O
 O
1hur 1 P84077 81.82 3e-107 X-RAY
 1995-07-10 GLN A:82 A:83 103.0 0.572 T -38.5 -77.5 103.0 0.572 0.0 HOH
 2.918
 OE1
 O
GLN B:82 B:83 120.0 0.667 G -68.5 -39.9 120.0 0.667 0.0
6ii6 2 P61204 83.13 4e-103 X-RAY
 2019-08-07 GLN C:71 C:83 136.0 0.756 T -55.3 126.1 47.0 0.261 0.495 A:None:0.494
 HOH
 2.944
 NE2
 O
GLN D:71 D:83 90.0 0.5 S -122.6 135.5 NA NA NA
3o47 1 Q8N6T3,P84077 84.94 4e-103 X-RAY
 2010-08-11 GLN A:231 A:213 132.0 0.733 T -46.9 -48.0 132.0 0.733 0.0
GLN B:231 B:213 89.0 NA T -46.1 -48.5 NA NA NA
7mge 4 P84077 83.54 1e-102 EM
 2021-06-23 GLN D:69 E:83 114.0 0.633 S -129.7 151.0 114.0 0.633 0.0
7dn8 2 P84077 83.54 3e-102 X-RAY
 2021-12-15 GLN B:71 D:83 114.0 0.633 T -62.5 -32.1 114.0 0.633 0.0 HOH
 3.921
 O
 O
GLN D:71 B:83 108.0 0.6 T -63.2 -32.1 NA NA NA
GLN F:71 F:83 112.0 0.622 T -63.1 -32.2 NA NA NA
GLN H:71 H:83 109.0 0.606 T -63.4 -32.4 NA NA NA
1r8s 1 P84080 85.62 4e-102 X-RAY
 2004-01-20 GLN A:66 A:83 94.0 0.522 T -60.9 136.2 71.0 0.394 0.128 B:Q99418:0.128
 BME
FMT
HOH
 6.225
7.965
2.929
 O
OE1
O
 C1
O2
O
1re0 1 P32889 85.62 4e-102 X-RAY
 2003-12-16 GLN A:66 A:83 97.0 0.539 T -63.5 154.0 92.0 0.511 0.028 B:P47102:0.028
 HOH
 3.444
 CG
 O
1s9d 1 P84080 85.62 4e-102 X-RAY
 2004-02-10 GLN A:66 A:83 121.0 0.672 T -56.4 -36.8 92.0 0.511 0.161 B:Q99418:0.161
 HOH
 2.548
 OE1
 O
1u81 1 P84077 85.62 4e-102 NMR
 2004-10-05 GLN A:66 A:83 88.0 0.489 H -63.9 -46.2 88.0 0.489 0.0
4c0a 2 P84080 85.62 4e-102 X-RAY
 2013-09-25 GLN C:66 C:83 96.0 0.533 H -53.7 -54.4 NA NA NA
GLN D:66 D:83 126.0 0.7 T -72.2 134.2 NA NA NA
GLN G:66 G:83 112.0 0.622 T -60.2 -37.0 112.0 0.622 0.0
GLN H:66 H:83 147.0 0.817 T -60.1 -4.6 NA NA NA
6fae 2 P84077 84.57 2e-101 X-RAY
 2018-01-17 GLN B:115 B:83 106.0 0.589 T -60.6 -45.8 93.0 0.517 0.072 A:Q5JU85:0.072
 HOH
 3.693
 OE1
 O
6cri 3 P84077 84.47 3e-101 EM
 2018-08-01 GLN C:67 C:83 156.0 0.867 S -81.6 131.9 87.0 0.483 0.384 B:Q10567:0.383
GLN E:67 H:83 131.0 0.728 S -118.6 135.0 33.0 0.183 0.545 D:P22892:0.256
F:P35585:0.428
GLN K:67 K:83 153.0 0.85 S -76.5 129.8 83.0 0.461 0.389 J:Q10567:0.389
GLN M:67 U:83 131.0 0.728 S -110.1 137.3 31.0 0.172 0.556 L:P22892:0.25
N:P35585:0.439
GLN S:67 L:83 161.0 0.894 S -80.5 128.4 89.0 0.494 0.4 R:Q10567:0.4
GLN U:67 V:83 135.0 0.75 S -116.2 133.0 34.0 0.189 0.561 V:P35585:0.456
T:P22892:0.244
7dn9 2 P84077 84.47 3e-101 X-RAY
 2021-12-15 GLN B:67 B:83 125.0 0.694 T -64.0 -30.5 125.0 0.694 0.0
GLN D:67 D:83 127.0 0.706 T -64.1 -30.7 NA NA NA
GLN F:67 F:83 127.0 0.706 T -64.1 -30.7 NA NA NA
GLN H:67 H:83 127.0 0.706 T -64.4 -30.7 NA NA NA
4hmy 5 P84077 84.47 4e-101 X-RAY
 2013-03-06 GLN E:74 C:83 123.0 0.683 T -49.5 129.5 81.0 0.45 0.233 B:Q10567:0.233
6cm9 3 P84077 84.47 5e-101 EM
 2018-08-08 GLN D:95 C:83 156.0 0.867 S -90.1 130.4 85.0 0.472 0.395 C:Q10567:0.394
GLN F:95 H:83 130.0 0.722 S -127.7 130.6 27.0 0.15 0.572 G:P35585:0.461
E:P22892:0.217
6d83 3 P84077 84.47 5e-101 EM
 2018-08-08 GLN D:95 C:83 130.0 0.722 T -77.9 127.3 69.0 0.383 0.339 C:Q10567:0.339
GLN F:95 H:83 129.0 0.717 S -106.0 139.5 23.0 0.128 0.589 G:P35585:0.456
E:P22892:0.272
6d84 3 P84077 84.47 5e-101 EM
 2018-08-08 GLN D:95 C:83 142.0 0.789 S -80.6 129.1 77.0 0.428 0.361 C:Q10567:0.361
GLN F:95 H:83 126.0 0.7 T -81.2 141.2 27.0 0.15 0.55 E:P22892:0.217
G:P35585:0.45
GLN L:95 I:83 141.0 0.783 T -76.7 124.2 68.0 0.378 0.405 K:Q10567:0.406
GLN N:95 N:83 133.0 0.739 T -80.6 142.7 31.0 0.172 0.567 O:P35585:0.444
M:P22892:0.261
6dff 3 P84077 84.47 5e-101 EM
 2018-08-08 GLN D:95 C:83 156.0 0.867 T -75.3 123.6 97.0 0.539 0.328 C:Q10567:0.328
GLN F:95 H:83 127.0 0.706 S -125.2 135.8 29.0 0.161 0.545 E:P22892:0.25
G:P35585:0.433
1j2j 1 Q8BSL7 85.0 6e-101 X-RAY
 2003-05-06 GLN A:68 A:83 123.0 0.683 T -54.2 126.9 80.0 0.444 0.239 B:Q9UJY5:0.239
 IOD
HOH
 7.165
2.707
 O
O
 I
O
1o3y 1 P84078 85.0 6e-101 X-RAY
 2003-05-20 GLN A:68 A:83 107.0 0.594 T -53.1 123.4 107.0 0.594 0.0 HOH
 2.995
 N
 O
GLN B:68 B:83 124.0 0.689 T -53.6 129.4 NA NA NA
2j59 1 P84078 85.0 6e-101 X-RAY
 2007-02-20 GLN A:68 A:83 128.0 0.711 T -58.4 127.2 128.0 0.711 0.0 HOH
 3.036
 N
 O
GLN B:68 B:83 124.0 0.689 T -56.8 127.4 NA NA NA
GLN C:68 C:83 144.0 0.8 T -51.4 127.5 NA NA NA
GLN D:68 D:83 106.0 0.589 T -51.9 127.7 NA NA NA
GLN E:68 E:83 126.0 0.7 T -58.8 127.8 NA NA NA
GLN F:68 F:83 119.0 0.661 T -58.6 131.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84085-f1 1 P84085 100.0 5e-135 GLN A:83 A:83 123.0 0.683 T -53.2 135.2
af-p18085-f1 1 P18085 90.0 2e-123 GLN A:83 A:83 124.0 0.689 T -57.4 136.3
af-p84077-f1 1 P84077 81.92 1e-108 GLN A:83 A:83 126.0 0.7 T -55.7 126.7