Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 127230150 . C A CCDS34745.1:NM_001662.3:c.289Cgg>Agg_NP_001653.1:p.97R>R Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2b6h 1 P84085 99.43 9e-130 X-RAY
 2005-10-11 ARG A:109 A:97 91.0 0.404 G -64.0 -30.7 91.0 0.404 0.0 UNX
UNX
HOH
 8.037
5.134
2.959
 N
N
O
 UNK
UNK
O
1z6x 1 P18085 90.0 4e-123 X-RAY
 2005-04-12 ARG A:97 A:97 97.0 0.431 G -70.1 -20.6 97.0 0.431 0.0 HOH
 3.130
 O
 O
ARG B:97 B:97 79.0 0.351 -58.1 -34.0 NA NA NA
3aq4 1 P36397 80.56 4e-110 X-RAY
 2011-01-26 ARG A:100 A:97 113.0 0.502 G -62.9 -30.3 113.0 0.502 0.0 HOH
 2.545
 NH1
 O
ARG B:100 B:97 122.0 0.542 G -69.9 -29.5 NA NA NA
1r8q 1 P84080 81.92 3e-108 X-RAY
 2004-01-20 ARG A:97 A:97 95.0 0.422 G -69.0 -28.1 95.0 0.422 0.0 HOH
 3.254
 O
 O
ARG C:97 B:97 75.0 0.333 G -60.3 -33.5 NA NA NA
1rrf 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 ARG A:97 A:97 131.0 0.582 H -78.0 -30.2 131.0 0.582 0.0
1rrg 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 ARG A:97 A:97 107.0 0.476 T -68.6 -20.1 107.0 0.476 0.0 HOH
 4.944
 NH2
 O
ARG B:97 B:97 99.0 0.44 -60.6 -27.0 99.0 0.44 0.0 HOH
 3.107
 O
 O
1hur 1 P84077 81.82 3e-107 X-RAY
 1995-07-10 ARG A:96 A:97 104.0 0.462 S -61.0 -18.3 104.0 0.462 0.0 HOH
 5.072
 N
 O
ARG B:96 B:97 110.0 0.489 G -83.7 -20.1 110.0 0.489 0.0 HOH
 5.031
 N
 O
6ii6 2 P61204 83.13 4e-103 X-RAY
 2019-08-07 ARG C:85 C:97 96.0 0.427 S -78.0 -34.2 96.0 0.427 0.0 HOH
 3.022
 O
 O
ARG D:85 D:97 99.0 0.44 S -67.3 -54.8 NA NA NA
3o47 1 Q8N6T3,P84077 84.94 4e-103 X-RAY
 2010-08-11 ARG A:245 A:227 99.0 0.44 S -71.1 -29.2 99.0 0.44 0.0
ARG B:245 B:227 108.0 0.48 S -70.3 -29.5 NA NA NA
7mge 4 P84077 83.54 1e-102 EM
 2021-06-23 ARG D:83 E:97 119.0 0.529 -80.5 51.8 119.0 0.529 0.0
7dn8 2 P84077 83.54 3e-102 X-RAY
 2021-12-15 ARG B:85 D:97 93.0 0.413 G -70.4 -26.2 93.0 0.413 0.0 HOH
 3.119
 O
 O
ARG D:85 B:97 103.0 0.458 G -70.1 -25.6 NA NA NA
ARG F:85 F:97 105.0 0.467 G -70.0 -25.7 NA NA NA
ARG H:85 H:97 98.0 0.436 G -70.0 -25.5 NA NA NA
1r8s 1 P84080 85.62 4e-102 X-RAY
 2004-01-20 ARG A:80 A:97 91.0 0.404 G -70.2 -30.1 91.0 0.404 0.0 HOH
 3.008
 O
 O
1re0 1 P32889 85.62 4e-102 X-RAY
 2003-12-16 ARG A:80 A:97 105.0 0.467 S -66.7 -33.0 105.0 0.467 0.0 HOH
 5.427
 N
 O
1s9d 1 P84080 85.62 4e-102 X-RAY
 2004-02-10 ARG A:80 A:97 96.0 0.427 G -65.8 -32.0 96.0 0.427 0.0 HOH
 2.735
 NH2
 O
1u81 1 P84077 85.62 4e-102 NMR
 2004-10-05 ARG A:80 A:97 88.0 0.391 -104.1 3.4 88.0 0.391 0.0
4c0a 2 P84080 85.62 4e-102 X-RAY
 2013-09-25 ARG C:80 C:97 97.0 0.431 S -64.2 -37.9 NA NA NA
ARG D:80 D:97 100.0 0.444 S -64.1 -38.0 NA NA NA
ARG G:80 G:97 100.0 0.444 S -64.3 -38.4 100.0 0.444 0.0
ARG H:80 H:97 99.0 0.44 S -63.9 -38.5 NA NA NA
6fae 2 P84077 84.57 2e-101 X-RAY
 2018-01-17 ARG B:129 B:97 101.0 0.449 G -65.0 -27.9 101.0 0.449 0.0 HOH
 2.691
 N
 O
6cri 3 P84077 84.47 3e-101 EM
 2018-08-01 ARG C:81 C:97 151.0 0.671 H -70.1 -30.6 151.0 0.671 0.0
ARG E:81 H:97 119.0 0.529 T -67.7 -28.3 119.0 0.529 0.0
ARG K:81 K:97 142.0 0.631 H -73.1 -32.1 142.0 0.631 0.0
ARG M:81 U:97 119.0 0.529 S -72.7 -29.4 119.0 0.529 0.0
ARG S:81 L:97 155.0 0.689 H -70.8 -32.0 155.0 0.689 0.0
ARG U:81 V:97 123.0 0.547 S -75.4 -30.3 123.0 0.547 0.0
7dn9 2 P84077 84.47 3e-101 X-RAY
 2021-12-15 ARG B:81 B:97 85.0 0.378 G -74.5 -26.6 85.0 0.378 0.0
ARG D:81 D:97 86.0 0.382 G -74.4 -26.9 NA NA NA
ARG F:81 F:97 86.0 0.382 G -74.3 -26.5 NA NA NA
ARG H:81 H:97 81.0 0.36 G -74.2 -26.8 NA NA NA
4hmy 5 P84077 84.47 4e-101 X-RAY
 2013-03-06 ARG E:88 C:97 110.0 0.489 G -64.1 -27.2 110.0 0.489 0.0
6cm9 3 P84077 84.47 5e-101 EM
 2018-08-08 ARG D:109 C:97 156.0 0.693 H -70.5 -29.8 156.0 0.693 0.0
ARG F:109 H:97 118.0 0.524 S -70.8 -28.9 118.0 0.524 0.0
6d83 3 P84077 84.47 5e-101 EM
 2018-08-08 ARG D:109 C:97 134.0 0.596 H -74.0 -29.3 134.0 0.596 0.0
ARG F:109 H:97 109.0 0.484 G -73.2 -20.8 109.0 0.484 0.0
6d84 3 P84077 84.47 5e-101 EM
 2018-08-08 ARG D:109 C:97 117.0 0.52 H -67.0 -32.8 117.0 0.52 0.0
ARG F:109 H:97 121.0 0.538 G -66.6 -28.3 121.0 0.538 0.0
ARG L:109 I:97 135.0 0.6 T -75.5 -22.6 135.0 0.6 0.0
ARG N:109 N:97 123.0 0.547 G -64.8 -29.2 123.0 0.547 0.0
6dff 3 P84077 84.47 5e-101 EM
 2018-08-08 ARG D:109 C:97 139.0 0.618 H -73.4 -31.5 139.0 0.618 0.0
ARG F:109 H:97 118.0 0.524 S -68.0 -31.4 118.0 0.524 0.0
1j2j 1 Q8BSL7 85.0 6e-101 X-RAY
 2003-05-06 ARG A:82 A:97 99.0 0.44 G -67.4 -31.4 99.0 0.44 0.0 HOH
 2.284
 NH1
 O
1o3y 1 P84078 85.0 6e-101 X-RAY
 2003-05-20 ARG A:82 A:97 121.0 0.538 G -63.3 -37.6 121.0 0.538 0.0 HOH
 2.769
 NH2
 O
ARG B:82 B:97 133.0 0.591 G -64.8 -36.2 NA NA NA
2j59 1 P84078 85.0 6e-101 X-RAY
 2007-02-20 ARG A:82 A:97 100.0 0.444 T -67.7 -28.9 100.0 0.444 0.0 HOH
 2.725
 O
 O
ARG B:82 B:97 95.0 0.422 G -66.8 -32.2 NA NA NA
ARG C:82 C:97 93.0 0.413 T -67.2 -26.6 NA NA NA
ARG D:82 D:97 90.0 0.4 G -66.8 -34.8 NA NA NA
ARG E:82 E:97 84.0 0.373 G -63.7 -36.6 NA NA NA
ARG F:82 F:97 93.0 0.413 -69.1 -33.2 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84085-f1 1 P84085 100.0 5e-135 ARG A:97 A:97 102.0 0.453 T -67.1 -22.0
af-p18085-f1 1 P18085 90.0 2e-123 ARG A:97 A:97 99.0 0.44 -71.0 -22.3
af-p84077-f1 1 P84077 81.92 1e-108 ARG A:97 A:97 105.0 0.467 T -66.4 -22.9