Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 127231083 . G A CCDS34745.1:NM_001662.3:c.397Gcc>Acc_NP_001653.1:p.133A>T Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2b6h 1 P84085 99.43 9e-130 X-RAY
 2005-10-11 ALA A:145 A:133 14.0 0.122 -51.7 138.6 14.0 0.122 0.0 GDP
UNX
HOH
 8.496
9.712
4.281
 CB
CA
N
 N1
UNK
O
1z6x 1 P18085 90.0 4e-123 X-RAY
 2005-04-12 ALA A:133 A:133 24.0 0.209 -75.8 127.8 24.0 0.209 0.0 GDP
HOH
 8.291
9.294
 CB
CA
 N2
O
ALA B:133 B:133 18.0 0.157 -44.1 135.2 NA NA NA
3aq4 1 P36397 80.56 4e-110 X-RAY
 2011-01-26 ALA A:136 A:133 20.0 0.174 -68.4 141.3 20.0 0.174 0.0 GDP
HOH
 8.388
4.439
 CB
O
 N1
O
ALA B:136 B:133 17.0 0.148 -60.9 141.6 NA NA NA
1r8q 1 P84080 81.92 3e-108 X-RAY
 2004-01-20 ALA A:133 A:133 17.0 0.148 -59.3 141.1 17.0 0.148 0.0 G3D
HOH
 8.416
2.703
 CB
O
 N1
O
ALA C:133 B:133 16.0 0.139 -63.5 142.1 NA NA NA
1rrf 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 ALA A:133 A:133 35.0 0.304 -98.5 154.5 35.0 0.304 0.0 GDP
 9.853
 CB
 N1
1rrg 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 ALA A:133 A:133 20.0 0.174 -92.0 130.3 20.0 0.174 0.0 GDP
HOH
 8.192
4.322
 CB
O
 N2
O
ALA B:133 B:133 16.0 0.139 -53.0 119.8 16.0 0.139 0.0 GDP
HOH
 8.140
2.524
 CB
O
 N1
O
1hur 1 P84077 81.82 3e-107 X-RAY
 1995-07-10 ALA A:132 A:133 19.0 0.165 -58.1 123.0 19.0 0.165 0.0 GDP
HOH
 8.107
8.303
 CB
CA
 N2
O
ALA B:132 B:133 22.0 0.191 -71.2 134.9 22.0 0.191 0.0 GDP
HOH
 8.557
3.046
 CB
O
 N1
O
6ii6 2 P61204 83.13 4e-103 X-RAY
 2019-08-07 ALA C:121 C:133 24.0 0.209 -76.6 126.1 24.0 0.209 0.0 GTP
HOH
 8.788
7.353
 CB
O
 N1
O
ALA D:121 D:133 22.0 0.191 -71.7 152.0 NA NA NA
3o47 1 Q8N6T3,P84077 84.94 4e-103 X-RAY
 2010-08-11 ALA A:281 A:263 19.0 0.165 -68.1 147.2 19.0 0.165 0.0 GDP
 8.595
 CB
 N2
ALA B:281 B:263 19.0 0.165 -68.6 146.9 NA NA NA
7mge 4 P84077 83.54 1e-102 EM
 2021-06-23 ALA D:119 E:133 7.0 0.061 S -95.1 127.8 7.0 0.061 0.0
7dn8 2 P84077 83.54 3e-102 X-RAY
 2021-12-15 ALA B:121 D:133 19.0 0.165 -75.8 135.1 19.0 0.165 0.0 GDP
HOH
 8.418
4.383
 CB
N
 N1
O
ALA D:121 B:133 18.0 0.157 -75.7 135.2 NA NA NA
ALA F:121 F:133 20.0 0.174 -74.5 138.0 NA NA NA
ALA H:121 H:133 19.0 0.165 -75.8 135.3 NA NA NA
1r8s 1 P84080 85.62 4e-102 X-RAY
 2004-01-20 ALA A:116 A:133 18.0 0.157 -61.4 139.2 18.0 0.157 0.0 GDP
HOH
 8.519
2.720
 CB
O
 N1
O
1re0 1 P32889 85.62 4e-102 X-RAY
 2003-12-16 ALA A:116 A:133 19.0 0.165 -76.1 130.8 19.0 0.165 0.0 GDP
HOH
 8.287
9.731
 CB
CB
 N1
O
1s9d 1 P84080 85.62 4e-102 X-RAY
 2004-02-10 ALA A:116 A:133 19.0 0.165 -60.6 144.9 19.0 0.165 0.0 GDP
HOH
 8.442
3.021
 CB
O
 N1
O
1u81 1 P84077 85.62 4e-102 NMR
 2004-10-05 ALA A:116 A:133 3.0 0.026 S -37.4 164.3 3.0 0.026 0.0 GDP
 9.687
 H
 O6
4c0a 2 P84080 85.62 4e-102 X-RAY
 2013-09-25 ALA C:116 C:133 20.0 0.174 -62.7 136.3 NA NA NA
ALA D:116 D:133 20.0 0.174 -62.9 136.2 NA NA NA
ALA G:116 G:133 21.0 0.183 -62.7 136.2 21.0 0.183 0.0 G3D
 8.609
 CB
 N1
ALA H:116 H:133 20.0 0.174 -63.0 136.2 NA NA NA
6fae 2 P84077 84.57 2e-101 X-RAY
 2018-01-17 ALA B:165 B:133 24.0 0.209 -80.5 149.5 24.0 0.209 0.0 HOH
 8.610
 O
 O
6cri 3 P84077 84.47 3e-101 EM
 2018-08-01 ALA C:117 C:133 19.0 0.165 -75.4 143.7 19.0 0.165 0.0 GTP
 9.086
 CB
 O6
ALA E:117 H:133 13.0 0.113 S -66.2 133.1 13.0 0.113 0.0 GTP
 8.573
 CB
 N1
ALA K:117 K:133 21.0 0.183 -70.8 145.5 21.0 0.183 0.0 GTP
 9.213
 CB
 O6
ALA M:117 U:133 13.0 0.113 S -67.9 130.4 13.0 0.113 0.0 GTP
 8.441
 CB
 N1
ALA S:117 L:133 22.0 0.191 -73.8 146.6 22.0 0.191 0.0 GTP
 9.391
 CB
 O6
ALA U:117 V:133 12.0 0.104 S -67.8 132.1 12.0 0.104 0.0 GTP
 8.289
 CB
 N1
7dn9 2 P84077 84.47 3e-101 X-RAY
 2021-12-15 ALA B:117 B:133 19.0 0.165 -76.7 136.7 19.0 0.165 0.0 GDP
 8.550
 CB
 N1
ALA D:117 D:133 19.0 0.165 -76.7 136.5 NA NA NA
ALA F:117 F:133 18.0 0.157 -77.0 136.5 NA NA NA
ALA H:117 H:133 18.0 0.157 -76.6 136.4 NA NA NA
4hmy 5 P84077 84.47 4e-101 X-RAY
 2013-03-06 ALA E:124 C:133 13.0 0.113 S -53.0 127.9 13.0 0.113 0.0 GTP
 9.035
 CB
 O6
6cm9 3 P84077 84.47 5e-101 EM
 2018-08-08 ALA D:145 C:133 22.0 0.191 -72.8 147.7 22.0 0.191 0.0
ALA F:145 H:133 13.0 0.113 S -72.7 142.6 13.0 0.113 0.0 GTP
 8.890
 CB
 N2
6d83 3 P84077 84.47 5e-101 EM
 2018-08-08 ALA D:145 C:133 18.0 0.157 S -74.3 158.0 18.0 0.157 0.0 GTP
 9.725
 CB
 O6
ALA F:145 H:133 16.0 0.139 -68.8 135.5 16.0 0.139 0.0 GTP
 9.210
 CB
 N2
6d84 3 P84077 84.47 5e-101 EM
 2018-08-08 ALA D:145 C:133 14.0 0.122 S -72.3 140.7 14.0 0.122 0.0 GTP
 9.168
 CB
 O6
ALA F:145 H:133 14.0 0.122 -69.7 129.8 14.0 0.122 0.0 GTP
 9.133
 CB
 N1
ALA L:145 I:133 24.0 0.209 -83.7 153.0 24.0 0.209 0.0 GTP
 9.113
 CB
 N1
ALA N:145 N:133 19.0 0.165 -76.9 137.7 19.0 0.165 0.0 GTP
 9.398
 CB
 N1
6dff 3 P84077 84.47 5e-101 EM
 2018-08-08 ALA D:145 C:133 15.0 0.13 S -72.3 139.8 15.0 0.13 0.0 GTP
 9.580
 CB
 O6
ALA F:145 H:133 16.0 0.139 S -69.5 163.0 16.0 0.139 0.0 GTP
 8.450
 CB
 N2
1j2j 1 Q8BSL7 85.0 6e-101 X-RAY
 2003-05-06 ALA A:118 A:133 20.0 0.174 -87.8 139.7 20.0 0.174 0.0 GTP
HOH
 8.515
3.202
 CB
O
 N1
O
1o3y 1 P84078 85.0 6e-101 X-RAY
 2003-05-20 ALA A:118 A:133 21.0 0.183 -60.1 134.8 21.0 0.183 0.0 GTP
HOH
 8.259
2.956
 CB
O
 N1
O
ALA B:118 B:133 22.0 0.191 -59.2 135.2 NA NA NA
2j59 1 P84078 85.0 6e-101 X-RAY
 2007-02-20 ALA A:118 A:133 18.0 0.157 -52.9 138.3 18.0 0.157 0.0 GTP
HOH
 8.432
2.634
 CB
O
 N1
O
ALA B:118 B:133 18.0 0.157 -57.8 141.8 NA NA NA
ALA C:118 C:133 16.0 0.139 -53.9 139.0 NA NA NA
ALA D:118 D:133 18.0 0.157 -53.5 136.0 NA NA NA
ALA E:118 E:133 17.0 0.148 -54.5 138.9 NA NA NA
ALA F:118 F:133 17.0 0.148 -54.3 137.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84085-f1 1 P84085 100.0 5e-135 ALA A:133 A:133 19.0 0.165 -57.3 130.4
af-p18085-f1 1 P18085 90.0 2e-123 ALA A:133 A:133 19.0 0.165 -56.7 133.7
af-p84077-f1 1 P84077 81.92 1e-108 ALA A:133 A:133 22.0 0.191 -58.5 125.6