Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 127231117 . G A CCDS34745.1:NM_001662.3:c.431gGg>gAg_NP_001653.1:p.144G>E Homo sapiens ADP ribosylation factor 5 (ARF5), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2b6h 1 P84085 99.43 9e-130 X-RAY
 2005-10-11 GLY A:156 A:144 16.0 0.213 T 79.2 21.9 16.0 0.213 0.0 HOH
 6.281
 N
 O
1z6x 1 P18085 90.0 4e-123 X-RAY
 2005-04-12 GLY A:144 A:144 28.0 0.373 T 66.0 35.8 28.0 0.373 0.0 HOH
 9.294
 C
 O
GLY B:144 B:144 22.0 0.293 T 72.9 24.0 NA NA NA
3aq4 1 P36397 80.56 4e-110 X-RAY
 2011-01-26 GLY A:147 A:144 7.0 0.093 T 67.7 26.5 7.0 0.093 0.0 HOH
 2.659
 O
 O
GLY B:147 B:144 9.0 0.12 T 65.5 36.2 NA NA NA
1r8q 1 P84080 81.92 3e-108 X-RAY
 2004-01-20 GLY A:144 A:144 19.0 0.253 T 70.1 31.9 19.0 0.253 0.0 HOH
 3.251
 C
 O
GLY C:144 B:144 19.0 0.253 T 71.5 38.2 NA NA NA
1rrf 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 GLY A:144 A:144 24.0 0.32 T 60.2 44.5 24.0 0.32 0.0
1rrg 1 P84079 81.92 3e-108 X-RAY
 1996-06-20 GLY A:144 A:144 12.0 0.16 T 56.4 45.0 12.0 0.16 0.0 HOH
 4.052
 CA
 O
GLY B:144 B:144 10.0 0.133 T 56.6 40.3 10.0 0.133 0.0 HOH
 6.610
 N
 O
1hur 1 P84077 81.82 3e-107 X-RAY
 1995-07-10 GLY A:143 A:144 13.0 0.173 T 62.0 39.1 13.0 0.173 0.0 HOH
 3.775
 C
 O
GLY B:143 B:144 25.0 0.333 T 69.0 54.2 25.0 0.333 0.0 HOH
 3.214
 CA
 O
6ii6 2 P61204 83.13 4e-103 X-RAY
 2019-08-07 GLY C:132 C:144 11.0 0.147 T 70.3 31.7 11.0 0.147 0.0 HOH
 3.401
 C
 O
GLY D:132 D:144 17.0 0.227 T 82.3 31.9 NA NA NA
3o47 1 Q8N6T3,P84077 84.94 4e-103 X-RAY
 2010-08-11 GLY A:292 A:274 22.0 0.293 T 66.8 46.3 22.0 0.293 0.0
GLY B:292 B:274 22.0 0.293 T 67.3 47.1 NA NA NA
7mge 4 P84077 83.54 1e-102 EM
 2021-06-23 GLY D:130 E:144 10.0 0.133 T 59.2 48.8 10.0 0.133 0.0
7dn8 2 P84077 83.54 3e-102 X-RAY
 2021-12-15 GLY B:132 D:144 9.0 0.12 T 75.9 27.5 9.0 0.12 0.0 HOH
 3.227
 C
 O
GLY D:132 B:144 10.0 0.133 T 75.8 27.3 NA NA NA
GLY F:132 F:144 10.0 0.133 T 75.6 27.4 NA NA NA
GLY H:132 H:144 10.0 0.133 T 75.5 27.3 NA NA NA
1r8s 1 P84080 85.62 4e-102 X-RAY
 2004-01-20 GLY A:127 A:144 18.0 0.24 T 69.2 29.0 18.0 0.24 0.0 FMT
HOH
 8.466
3.530
 O
C
 O2
O
1re0 1 P32889 85.62 4e-102 X-RAY
 2003-12-16 GLY A:127 A:144 20.0 0.267 T 62.6 28.2 20.0 0.267 0.0 CIT
HOH
 7.098
3.404
 O
C
 O6
O
1s9d 1 P84080 85.62 4e-102 X-RAY
 2004-02-10 GLY A:127 A:144 12.0 0.16 T 74.1 27.3 12.0 0.16 0.0 HOH
 2.945
 C
 O
1u81 1 P84077 85.62 4e-102 NMR
 2004-10-05 GLY A:127 A:144 24.0 0.32 S 91.6 0.2 24.0 0.32 0.0
4c0a 2 P84080 85.62 4e-102 X-RAY
 2013-09-25 GLY C:127 C:144 23.0 0.307 T 65.0 32.3 NA NA NA
GLY D:127 D:144 21.0 0.28 T 65.5 30.0 NA NA NA
GLY G:127 G:144 23.0 0.307 T 65.0 32.2 23.0 0.307 0.0
GLY H:127 H:144 18.0 0.24 T 65.5 31.7 NA NA NA
6fae 2 P84077 84.57 2e-101 X-RAY
 2018-01-17 GLY B:176 B:144 9.0 0.12 T 66.3 29.4 9.0 0.12 0.0 HOH
 3.079
 CA
 O
6cri 3 P84077 84.47 3e-101 EM
 2018-08-01 GLY C:128 C:144 16.0 0.213 T 78.5 63.6 16.0 0.213 0.0
GLY E:128 H:144 11.0 0.147 T 72.2 54.2 11.0 0.147 0.0
GLY K:128 K:144 16.0 0.213 T 76.1 59.5 16.0 0.213 0.0
GLY M:128 U:144 11.0 0.147 T 69.7 56.8 11.0 0.147 0.0
GLY S:128 L:144 16.0 0.213 T 74.4 66.8 16.0 0.213 0.0
GLY U:128 V:144 11.0 0.147 T 74.9 53.3 11.0 0.147 0.0
7dn9 2 P84077 84.47 3e-101 X-RAY
 2021-12-15 GLY B:128 B:144 10.0 0.133 T 80.6 32.3 10.0 0.133 0.0
GLY D:128 D:144 11.0 0.147 T 80.3 32.5 NA NA NA
GLY F:128 F:144 10.0 0.133 T 80.5 32.3 NA NA NA
GLY H:128 H:144 10.0 0.133 T 80.5 32.6 NA NA NA
4hmy 5 P84077 84.47 4e-101 X-RAY
 2013-03-06 GLY E:135 C:144 22.0 0.293 T 65.2 21.3 22.0 0.293 0.0
6cm9 3 P84077 84.47 5e-101 EM
 2018-08-08 GLY D:156 C:144 17.0 0.227 T 71.5 59.5 17.0 0.227 0.0
GLY F:156 H:144 14.0 0.187 T 80.9 50.7 14.0 0.187 0.0
6d83 3 P84077 84.47 5e-101 EM
 2018-08-08 GLY D:156 C:144 19.0 0.253 T 69.5 53.8 19.0 0.253 0.0
GLY F:156 H:144 13.0 0.173 T 71.4 55.8 13.0 0.173 0.0
6d84 3 P84077 84.47 5e-101 EM
 2018-08-08 GLY D:156 C:144 18.0 0.24 T 73.1 55.3 18.0 0.24 0.0
GLY F:156 H:144 15.0 0.2 T 74.4 54.1 15.0 0.2 0.0
GLY L:156 I:144 22.0 0.293 T 73.8 49.7 22.0 0.293 0.0
GLY N:156 N:144 15.0 0.2 T 86.4 48.9 15.0 0.2 0.0
6dff 3 P84077 84.47 5e-101 EM
 2018-08-08 GLY D:156 C:144 16.0 0.213 T 71.6 55.2 16.0 0.213 0.0
GLY F:156 H:144 11.0 0.147 T 77.2 46.2 11.0 0.147 0.0
1j2j 1 Q8BSL7 85.0 6e-101 X-RAY
 2003-05-06 GLY A:129 A:144 14.0 0.187 T 68.1 32.1 14.0 0.187 0.0 HOH
 3.237
 CA
 O
1o3y 1 P84078 85.0 6e-101 X-RAY
 2003-05-20 GLY A:129 A:144 10.0 0.133 T 67.2 31.1 10.0 0.133 0.0 HOH
 3.180
 C
 O
GLY B:129 B:144 25.0 0.333 T 62.7 39.0 NA NA NA
2j59 1 P84078 85.0 6e-101 X-RAY
 2007-02-20 GLY A:129 A:144 27.0 0.36 T 61.5 40.6 27.0 0.36 0.0 HOH
 3.387
 CA
 O
GLY B:129 B:144 29.0 0.387 T 58.7 39.5 NA NA NA
GLY C:129 C:144 7.0 0.093 T 60.1 33.8 NA NA NA
GLY D:129 D:144 26.0 0.347 T 65.1 38.9 NA NA NA
GLY E:129 E:144 7.0 0.093 T 57.4 37.6 NA NA NA
GLY F:129 F:144 23.0 0.307 T 57.5 38.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p84085-f1 1 P84085 100.0 5e-135 GLY A:144 A:144 14.0 0.187 T 66.4 25.4
af-p18085-f1 1 P18085 90.0 2e-123 GLY A:144 A:144 28.0 0.373 T 65.7 23.2
af-p84077-f1 1 P84077 81.92 1e-108 GLY A:144 A:144 13.0 0.173 T 68.0 31.1