Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 141443388 . G A CCDS5866.1:NM_001256510.1:c.113cGa>cAa_NP_001243439.1:p.38R>Q Homo sapiens single stranded DNA binding protein 1 (SSBP1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6rup 1 Q04837 100.0 9e-97 X-RAY
 2019-10-09 ARG A:30 A:38 123.0 0.547 E -110.2 134.4 93.0 0.413 0.134 B:Q04837:0.133
 HOH
 3.586
 N
 O
ARG B:30 B:38 127.0 0.564 E -119.8 139.2 98.0 0.436 0.128 A:Q04837:0.129
 HOH
 2.758
 NH2
 O
2dud 1 Q04837 100.0 1e-96 X-RAY
 2007-01-21 ARG A:23 A:22 138.0 0.613 E -103.3 137.6 138.0 0.613 0.0
ARG B:23 B:22 136.0 0.604 E -99.9 131.2 136.0 0.604 0.0
1s3o 1 Q04837 100.0 2e-95 X-RAY
 2004-06-22 ARG A:22 A:22 139.0 0.618 E -104.0 128.9 122.0 0.542 0.076 B:Q04837:0.076
 HOH
 6.759
 NH2
 O
ARG B:22 B:22 135.0 0.6 E -97.6 124.5 102.0 0.453 0.147 A:Q04837:0.147
3ull 1 Q04837 100.0 2e-95 X-RAY
 1997-10-15 ARG A:22 A:22 137.0 0.609 E -101.5 136.8 110.0 0.489 0.12 B:Q04837:0.12
 HOH
 3.057
 NH2
 O
ARG B:22 B:22 136.0 0.604 E -100.9 133.5 94.0 0.418 0.186 A:Q04837:0.027
A:Q04837:0.164
 HOH
 4.411
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q04837-f1 1 Q04837 100.0 1e-108 ARG A:38 A:38 96.0 0.427 E -115.0 139.7