Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 25163343 . G A CCDS5393.1:NM_018947.5:c.295Ctc>Ttc_NP_061820.1:p.99L>F Homo sapiens cytochrome c, somatic (CYCS), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9i 1 P99999 100.0 2e-73 NMR
2016-02-17 LEU A:98 A:98 13.0 0.076 H -61.0 -45.2 13.0 0.076 0.0 HEC
3.367
HD12
HMB1
2n9j 1 P99999 100.0 2e-73 NMR
2016-02-17 LEU A:98 A:98 13.0 0.076 H -53.1 -29.0 13.0 0.076 0.0 HEC
2.076
HD11
HMB1
3zcf 1 P99999 100.0 2e-73 X-RAY
2013-10-23 LEU A:98 A:98 8.0 0.047 H -56.7 -44.0 8.0 0.047 0.0 HEC
HOH
3.806
4.615
CD1
O
CMB
O
LEU B:98 B:98 9.0 0.053 H -61.6 -43.0 NA NA NA
LEU C:98 C:98 9.0 0.053 H -64.4 -35.5 NA NA NA
LEU D:98 D:98 8.0 0.047 H -65.4 -39.6 NA NA NA
2n3y 1 P99999 99.04 7e-73 NMR
2016-12-14 LEU A:98 A:98 8.0 0.047 H -61.5 -36.9 8.0 0.047 0.0 MH0
2.723
HD13
H13
3zoo 1 P99999 99.04 7e-73 X-RAY
2013-10-23 LEU A:98 A:98 8.0 0.047 H -60.9 -35.9 8.0 0.047 0.0 HEC
HOH
3.921
4.680
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -59.1 -42.5 NA NA NA
LEU C:98 C:98 8.0 0.047 H -58.0 -38.8 NA NA NA
LEU D:98 D:98 8.0 0.047 H -63.8 -39.8 NA NA NA
5ty3 1 P99999 99.04 9e-73 X-RAY
2017-09-06 LEU A:98 A:98 9.0 0.053 H -57.7 -40.6 9.0 0.053 0.0 HEC
HOH
2.601
4.680
HD11
O
HMB3
O
LEU B:98 B:98 9.0 0.053 H -59.7 -41.3 NA NA NA
6xnk 1 P99999 99.04 9e-73 X-RAY
2021-07-07 LEU A:98 A:98 78.0 0.459 H -63.3 -42.3 12.0 0.071 0.388 B:P99999:0.388
HEC
HOH
2.634
5.269
HD11
O
HMB1
O
LEU B:98 C:98 73.0 0.429 H -61.8 -42.0 9.0 0.053 0.376 A:P99999:0.376
HEC
HOH
2.771
5.227
HD11
O
HMB1
O
LEU C:98 E:98 74.0 0.435 H -64.4 -43.5 NA NA NA
LEU D:98 G:98 76.0 0.447 H -62.7 -40.1 NA NA NA
3nwv 1 P99999 99.04 1e-72 X-RAY
2011-03-09 LEU A:98 A:98 7.0 0.041 H -64.7 -37.0 7.0 0.041 0.0 HEC
HOH
3.710
5.113
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -61.2 -39.6 NA NA NA
LEU C:98 C:98 8.0 0.047 H -67.9 -39.6 NA NA NA
LEU D:98 D:98 9.0 0.053 H -61.0 -40.6 NA NA NA
5exq 1 P99999 99.04 1e-72 X-RAY
2016-11-30 LEU A:98 A:98 8.0 0.047 H -61.2 -42.7 8.0 0.047 0.0 HEC
HOH
3.745
4.799
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -59.3 -42.7 NA NA NA
5o10 1 P99999 99.04 1e-72 X-RAY
2018-03-28 LEU A:98 A:98 9.0 0.053 H -60.2 -41.2 9.0 0.053 0.0 HEC
HOH
3.841
4.679
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -56.8 -42.0 8.0 0.047 0.0 HEC
HOH
3.925
4.709
CD1
O
CMB
O
6duj 1 P99999 99.04 1e-72 X-RAY
2019-06-26 LEU A:98 A:98 9.0 0.053 H -65.4 -41.3 9.0 0.053 0.0 HEC
HOH
2.870
5.232
HD11
O
HMB3
O
LEU B:98 C:98 8.0 0.047 H -63.6 -39.8 NA NA NA
6ecj 1 P99999 99.04 2e-72 X-RAY
2019-08-14 LEU A:98 A:98 7.0 0.041 H -62.3 -37.5 7.0 0.041 0.0 HEC
HOH
3.912
5.074
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -63.1 -36.8 NA NA NA
LEU C:98 C:98 7.0 0.041 H -63.0 -37.8 NA NA NA
LEU D:98 D:98 6.0 0.035 H -63.1 -37.3 NA NA NA
LEU E:98 E:98 7.0 0.041 H -61.9 -38.0 NA NA NA
LEU F:98 F:98 8.0 0.047 H -62.2 -36.9 NA NA NA
LEU G:98 G:98 8.0 0.047 H -62.6 -37.5 NA NA NA
LEU H:98 H:98 10.0 0.059 H -64.0 -36.9 NA NA NA
5dfs 1 P00003 95.24 3e-71 X-RAY
2016-03-02 LEU A:99 A:98 7.0 0.041 H -63.5 -40.5 7.0 0.041 0.0 HEC
CL
HOH
2.578
9.429
4.842
HD11
HB2
O
HMB3
CL
O
LEU B:99 B:98 9.0 0.053 H -58.9 -42.1 NA NA NA
5c0z 1 P62898 91.43 7e-68 X-RAY
2016-09-21 LEU A:99 A:98 9.0 0.053 H -57.9 -43.4 9.0 0.053 0.0 HEC
HOH
3.958
5.170
CD1
O
CMB
O
LEU B:99 B:98 9.0 0.053 H -60.5 -40.6 NA NA NA
LEU C:99 C:98 9.0 0.053 H -59.9 -40.5 NA NA NA
LEU D:99 D:98 8.0 0.047 H -61.8 -36.4 NA NA NA
5c9m 1 P62898 90.48 3e-67 X-RAY
2016-09-21 LEU A:99 A:98 8.0 0.047 H -62.8 -38.4 8.0 0.047 0.0 HEC
HOH
3.951
5.218
CD1
O
CMB
O
LEU B:99 B:98 9.0 0.053 H -60.1 -37.7 NA NA NA
LEU C:99 C:98 8.0 0.047 H -60.7 -39.8 NA NA NA
LEU D:99 D:98 8.0 0.047 H -60.5 -39.0 NA NA NA
7ljx 1 P62898 90.38 1e-66 X-RAY
2021-05-12 LEU A:98 A:98 8.0 0.047 H -58.8 -39.1 8.0 0.047 0.0 HEC
HOH
3.917
4.945
CD1
O
CMB
O
LEU B:98 B:98 7.0 0.041 H -56.4 -41.0 NA NA NA
2b4z 1 P62894 90.38 2e-66 X-RAY
2005-10-11 LEU A:98 A:98 9.0 0.053 H -61.0 -39.1 9.0 0.053 0.0 HEM
HOH
4.122
4.719
CD1
O
CMB
O
2ybb 33 P62894 90.38 2e-66 EM
2011-10-19 LEU GA:98 Y:98 9.0 0.053 H -60.9 -39.1 9.0 0.053 0.0 HEM
HOH
4.122
4.720
CD1
O
CMB
O
3j2t 2 P62894 90.38 2e-66 EM
2013-04-10 LEU H:98 H:98 9.0 0.053 H -61.0 -39.1 9.0 0.053 0.0 HEM
4.123
CD1
CMB
LEU I:98 I:98 9.0 0.053 H -61.0 -39.0 9.0 0.053 0.0 HEM
4.123
CD1
CMB
LEU J:98 J:98 9.0 0.053 H -60.9 -39.1 9.0 0.053 0.0 HEM
4.123
CD1
CMB
LEU K:98 K:98 9.0 0.053 H -60.9 -39.1 9.0 0.053 0.0 HEM
4.123
CD1
CMB
LEU L:98 L:98 8.0 0.047 H -60.9 -39.0 8.0 0.047 0.0 HEM
4.122
CD1
CMB
LEU M:98 M:98 9.0 0.053 H -60.9 -39.1 9.0 0.053 0.0 HEM
4.123
CD1
CMB
LEU N:98 N:98 9.0 0.053 H -61.0 -39.0 9.0 0.053 0.0 HEM
4.122
CD1
CMB
5juy 2 P62894 90.38 2e-66 EM
2016-10-19 LEU H:98 H:98 9.0 0.053 H -63.0 -41.8 9.0 0.053 0.0 HEC
4.861
CD1
CMB
LEU I:98 I:98 8.0 0.047 H -63.1 -41.7 8.0 0.047 0.0 HEC
4.861
CD1
CMB
LEU J:98 J:98 8.0 0.047 H -63.1 -41.8 8.0 0.047 0.0 HEC
4.861
CD1
CMB
LEU K:98 K:98 9.0 0.053 H -63.0 -41.8 9.0 0.053 0.0 HEC
4.862
CD1
CMB
LEU L:98 L:98 9.0 0.053 H -63.1 -41.8 9.0 0.053 0.0 HEC
4.861
CD1
CMB
LEU M:98 M:98 8.0 0.047 H -63.0 -41.8 8.0 0.047 0.0 HEC
4.860
CD1
CMB
LEU N:98 N:98 8.0 0.047 H -63.1 -41.8 8.0 0.047 0.0 HEC
4.862
CD1
CMB
6ff5 1 P62894 90.38 2e-66 X-RAY
2018-03-21 LEU A:98 A:98 10.0 0.059 H -60.5 -41.6 10.0 0.059 0.0 HEC
NO3
NO3
SO4
HOH
3.890
8.403
9.981
7.913
5.291
CD1
CD2
O
N
O
CMB
O1
O1
O4
O
6n1o 1 P62898 90.38 4e-66 X-RAY
2019-10-23 LEU A:98 A:98 9.0 0.053 H -64.5 -37.8 9.0 0.053 0.0 HEC
HOH
3.892
5.157
CD1
O
CMB
O
LEU B:98 B:98 9.0 0.053 H -62.3 -39.9 NA NA NA
LEU C:98 C:98 8.0 0.047 H -63.0 -39.7 NA NA NA
LEU D:98 D:98 8.0 0.047 H -65.2 -37.4 NA NA NA
3jbt 2 P00004 88.57 4e-66 EM
2015-11-18 LEU B:99 B:98 8.0 0.047 H -60.3 -39.2 8.0 0.047 0.0 HEM
3.816
CD1
CMB
LEU D:99 D:98 8.0 0.047 H -60.3 -39.2 8.0 0.047 0.0 HEM
3.816
CD1
CMB
LEU F:99 F:98 9.0 0.053 H -60.3 -39.2 9.0 0.053 0.0 HEM
3.815
CD1
CMB
LEU H:99 H:98 8.0 0.047 H -60.3 -39.2 8.0 0.047 0.0 HEM
3.815
CD1
CMB
LEU J:99 J:98 8.0 0.047 H -60.3 -39.2 8.0 0.047 0.0 HEM
3.815
CD1
CMB
LEU L:99 L:98 8.0 0.047 H -60.3 -39.2 8.0 0.047 0.0 HEM
3.815
CD1
CMB
LEU N:99 N:98 9.0 0.053 H -60.4 -39.2 9.0 0.053 0.0 HEM
3.815
CD1
CMB
5wve 2 P00004 88.57 4e-66 EM
2017-02-08 LEU B:99 B:98 8.0 0.047 H -60.4 -39.2 8.0 0.047 0.0 HEM
3.815
CD1
CMB
LEU D:99 D:98 8.0 0.047 H -60.3 -39.4 8.0 0.047 0.0 HEM
3.816
CD1
CMB
LEU F:99 F:98 8.0 0.047 H -60.3 -39.3 8.0 0.047 0.0 HEM
3.817
CD1
CMB
LEU H:99 H:98 8.0 0.047 H -60.4 -39.2 8.0 0.047 0.0 HEM
3.817
CD1
CMB
LEU J:99 J:98 8.0 0.047 H -60.3 -39.3 8.0 0.047 0.0 HEM
3.814
CD1
CMB
LEU L:99 L:98 8.0 0.047 H -60.2 -39.3 8.0 0.047 0.0 HEM
3.815
CD1
CMB
LEU N:99 N:98 9.0 0.053 H -60.3 -39.2 9.0 0.053 0.0 HEM
3.815
CD1
CMB
5df5 1 P62898 90.38 5e-66 X-RAY
2016-09-14 LEU A:98 A:98 9.0 0.053 H -61.6 -37.5 9.0 0.053 0.0 HEC
HOH
3.977
5.181
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -60.5 -40.4 NA NA NA
LEU C:98 C:98 8.0 0.047 H -61.2 -39.9 NA NA NA
LEU D:98 D:98 8.0 0.047 H -60.0 -37.5 NA NA NA
1ocd 1 P00004 88.46 3e-65 NMR
1997-06-16 LEU A:98 A:98 1.0 0.006 H -48.4 -46.4 1.0 0.006 0.0 HEC
HOH
5.161
2.205
HD21
HB2
HMB3
O
1u75 2 P00004 88.46 3e-65 X-RAY
2004-09-28 LEU B:98 B:98 18.0 0.106 H -50.1 -45.4 18.0 0.106 0.0 HEC
HOH
4.047
5.163
CD2
O
CMB
O
2frc 1 P00004 88.46 3e-65 NMR
1997-07-29 LEU A:98 A:98 0.0 0.0 H -88.0 -60.8 0.0 0.0 0.0 HEC
HOH
2.753
2.317
HD12
HD11
HMB2
H2
2n3b 1 P00004 88.46 3e-65 NMR
2015-10-28 LEU A:98 A:98 3.0 0.018 H -59.7 -23.0 3.0 0.018 0.0 HEC
HOH
2.297
2.044
HD11
HD12
HMB2
H1
2pcb 2 P00004 88.46 3e-65 X-RAY
1993-07-15 LEU B:98 B:98 11.0 0.065 H -62.8 -57.5 11.0 0.065 0.0 HEM
HOH
4.289
4.904
CD1
O
CMB
O
3nbs 1 P00004 88.46 3e-65 X-RAY
2010-07-14 LEU A:98 A:98 78.0 0.459 H -64.8 -44.5 11.0 0.065 0.394 B:P00004:0.394
HEC
HOH
4.010
4.952
CD1
O
CMB
O
LEU B:98 B:98 78.0 0.459 H -62.4 -42.5 9.0 0.053 0.406 A:P00004:0.406
HEC
HOH
4.035
5.276
CD1
O
CMB
O
LEU C:98 C:98 80.0 0.471 H -62.3 -40.3 NA NA NA
LEU D:98 D:98 75.0 0.441 H -66.1 -37.5 NA NA NA
3nbt 1 P00004 88.46 3e-65 X-RAY
2010-07-14 LEU A:98 A:98 74.0 0.435 H -69.7 -36.0 9.0 0.053 0.382 F:P00004:0.382
HEC
HOH
3.789
4.793
CD1
O
CMB
O
LEU B:98 B:98 76.0 0.447 H -55.2 -40.7 NA NA NA
LEU C:98 C:98 75.0 0.441 H -60.9 -37.0 NA NA NA
LEU D:98 D:98 80.0 0.471 H -60.3 -40.3 NA NA NA
LEU E:98 E:98 76.0 0.447 H -61.1 -44.6 8.0 0.047 0.4 A:P00004:0.4
HEC
HOH
4.004
6.073
CD1
N
CMB
O
LEU F:98 F:98 76.0 0.447 H -60.5 -39.0 9.0 0.053 0.394 E:P00004:0.394
HEC
HOH
3.846
5.079
CD1
O
CMB
O
3wc8 1 P00004 88.46 3e-65 X-RAY
2013-12-11 LEU A:98 A:98 79.0 0.465 H -60.2 -38.8 9.0 0.053 0.412 A:P00004:0.412
HEC
PO4
HOH
3.832
7.658
5.291
CD1
N
O
CMB
O3
O
3wui 1 P00004 88.46 3e-65 X-RAY
2014-07-16 LEU A:98 A:98 78.0 0.459 H -64.1 -40.2 8.0 0.047 0.412 A:P00004:0.412
HEC
PO4
HOH
3.997
7.687
4.604
CD1
N
O
CMB
O3
O
4rsz 1 P00004 88.46 3e-65 X-RAY
2015-01-14 LEU A:98 A:98 9.0 0.053 H -60.3 -39.3 9.0 0.053 0.0 HEC
NO3
HOH
3.844
8.260
4.977
CD1
CD2
O
CMB
O3
O
LEU B:98 B:98 8.0 0.047 H -61.6 -39.1 NA NA NA
LEU C:98 C:98 9.0 0.053 H -60.9 -37.4 NA NA NA
LEU D:98 D:98 8.0 0.047 H -60.1 -40.3 NA NA NA
LEU E:98 E:98 7.0 0.041 H -60.2 -40.2 NA NA NA
LEU F:98 F:98 8.0 0.047 H -61.1 -38.7 NA NA NA
6suv 1 P00004 88.46 3e-65 X-RAY
2020-07-22 LEU A:98 AaA:98 9.0 0.053 H -70.0 -39.6 9.0 0.053 0.0 HEC
HOH
3.983
5.681
CD1
N
CMB
O
LEU B:98 BaB:98 9.0 0.053 H -70.1 -39.3 NA NA NA
LEU C:98 CaC:98 8.0 0.047 H -70.3 -39.4 NA NA NA
LEU D:98 DaD:98 9.0 0.053 H -69.9 -39.7 NA NA NA
LEU E:98 EaE:98 8.0 0.047 H -69.8 -40.2 NA NA NA
LEU F:98 FaF:98 9.0 0.053 H -69.2 -39.7 NA NA NA
LEU G:98 GaG:98 9.0 0.053 H -69.9 -39.6 NA NA NA
LEU H:98 HaH:98 9.0 0.053 H -69.9 -39.6 NA NA NA
1crc 1 P00004 88.46 3e-65 X-RAY
1996-03-08 LEU A:99 A:98 7.0 0.041 H -75.0 -35.1 7.0 0.041 0.0 HEC
HOH
3.962
4.937
CD1
O
CMB
O
LEU B:99 B:98 6.0 0.035 H -54.6 -63.4 NA NA NA
1hrc 1 P00004 88.46 3e-65 X-RAY
1994-11-01 LEU A:99 A:98 10.0 0.059 H -56.2 -43.2 10.0 0.059 0.0 HEC
HOH
4.090
5.197
CD1
O
CMB
O
1wej 3 P00004 88.46 3e-65 X-RAY
1998-12-09 LEU C:99 F:98 9.0 0.053 H -57.9 -44.8 9.0 0.053 0.0 HEM
HOH
3.865
5.096
CD1
O
CMB
O
3o1y 1 P00004 88.46 3e-65 X-RAY
2012-01-25 LEU A:99 A:98 10.0 0.059 H -58.9 -37.3 10.0 0.059 0.0 HEC
NO3
NO3
NO3
HOH
3.785
9.777
8.645
6.531
5.158
CD1
N
CD2
O
O
CMB
O3
O1
O3
O
LEU B:99 B:98 9.0 0.053 H -60.5 -40.2 NA NA NA
LEU C:99 C:98 10.0 0.059 H -59.4 -40.9 NA NA NA
3o20 1 P00004 88.46 3e-65 X-RAY
2012-01-25 LEU A:99 A:98 7.0 0.041 H -64.7 -33.7 7.0 0.041 0.0 HEC
NO3
HOH
3.721
8.623
4.969
CD1
CD2
O
CMB
O1
O
LEU B:99 B:98 7.0 0.041 H -64.3 -35.4 NA NA NA
LEU C:99 C:98 7.0 0.041 H -58.9 -40.2 NA NA NA
5iy5 14 P00004 88.46 3e-65 X-RAY
2017-01-11 LEU AA:99 1:98 9.0 0.053 H -66.3 -29.2 9.0 0.053 0.0 HEC
HOH
3.903
7.516
CD1
N
CMB
O
LEU BA:99 2:98 10.0 0.059 H -58.7 -28.1 NA NA NA
6k9i 1 P00004 88.46 3e-65 X-RAY
2020-06-17 LEU A:99 A:98 9.0 0.053 H -57.9 -41.1 9.0 0.053 0.0 HEC
HOH
3.984
4.933
CD1
O
CMB
O
6k9j 1 P00004 88.46 3e-65 X-RAY
2020-06-17 LEU A:99 A:98 10.0 0.059 H -58.4 -43.2 10.0 0.059 0.0 HEC
HOH
3.859
4.773
CD1
O
CMB
O
5zkv 1 P00004 87.5 6e-64 NMR
2019-05-22 LEU A:98 A:98 37.0 0.218 H -62.8 -34.9 37.0 0.218 0.0 HEC
3.805
HD13
HMB3
4nfg 2 P00004 85.58 5e-63 X-RAY
2014-09-24 LEU B:98 B:98 8.0 0.047 H -59.7 -41.0 8.0 0.047 0.0 HEC
HOH
3.802
4.561
CD1
O
CMB
O
2aiu 1 P00015 83.65 2e-62 X-RAY
2006-07-18 LEU A:99 A:99 9.0 0.053 H -57.8 -40.3 9.0 0.053 0.0 HEM
HOH
3.592
5.242
CD1
O
CMB
O
1cyc 1 P00025 80.58 3e-58 X-RAY
1976-10-06 LEU A:98 A:98 32.0 0.188 I -68.0 -62.7 32.0 0.188 0.0 HEC
4.262
CD1
CMB
LEU B:98 B:98 32.0 0.188 I -68.0 -62.7 NA NA NA
1i54 1 P81459 80.58 3e-58 X-RAY
2001-05-09 LEU A:98 A:98 9.0 0.053 H -55.6 -46.1 9.0 0.053 0.0 HEC
ZNH
HOH
3.823
3.827
4.444
CD2
CD2
O
CMB
CMB
O
LEU B:98 B:98 8.0 0.047 H -55.4 -42.6 NA NA NA
1i55 1 P81459 80.58 3e-58 X-RAY
2001-05-09 LEU A:98 A:98 9.0 0.053 H -56.0 -45.1 9.0 0.053 0.0 HEC
ZNH
HOH
3.831
3.843
4.535
CD2
CD2
O
CMB
CMB
O
LEU B:98 B:98 7.0 0.041 H -53.8 -45.3 NA NA NA
1lfm 1 P81459 80.58 3e-58 X-RAY
2002-07-19 LEU A:98 A:98 8.0 0.047 H -58.0 -44.5 8.0 0.047 0.0 COH
HOH
3.864
4.620
CD1
O
CMB
O
LEU B:98 B:98 8.0 0.047 H -59.3 -38.2 NA NA NA
3cyt 1 P81459 80.58 3e-58 X-RAY
1980-09-16 LEU A:99 O:98 10.0 0.059 H -54.7 -34.1 10.0 0.059 0.0 HEC
HOH
3.873
5.463
CD2
O
CMB
O
LEU B:99 I:98 11.0 0.065 H -54.5 -43.7 NA NA NA
5cyt 1 P81459 80.58 3e-58 X-RAY
1989-07-12 LEU A:99 R:98 8.0 0.047 H -59.4 -38.7 8.0 0.047 0.0 HEC
HOH
3.896
4.764
CD1
O
CMB
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p99999-f1 1 P99999 100.0 1e-74 LEU A:99 A:99 8.0 0.047 H -59.7 -41.6