Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 25163348 . G A CCDS5393.1:NM_018947.5:c.290gCt>gTt_NP_061820.1:p.97A>V Homo sapiens cytochrome c, somatic (CYCS), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9i 1 P99999 100.0 2e-73 NMR
2016-02-17 ALA A:96 A:96 19.0 0.165 H -55.9 -54.6 19.0 0.165 0.0 HEC
8.934
N
HMB1
2n9j 1 P99999 100.0 2e-73 NMR
2016-02-17 ALA A:96 A:96 25.0 0.217 H -77.1 -24.6 25.0 0.217 0.0 HEC
8.888
H
HMB1
3zcf 1 P99999 100.0 2e-73 X-RAY
2013-10-23 ALA A:96 A:96 20.0 0.174 H -65.5 -43.4 20.0 0.174 0.0 HEC
HOH
9.550
2.797
N
O
CMB
O
ALA B:96 B:96 17.0 0.148 H -55.1 -48.5 NA NA NA
ALA C:96 C:96 20.0 0.174 H -61.0 -43.8 NA NA NA
ALA D:96 D:96 22.0 0.191 H -55.3 -48.2 NA NA NA
2n3y 1 P99999 99.04 7e-73 NMR
2016-12-14 ALA A:96 A:96 23.0 0.2 H -63.8 -45.6 23.0 0.2 0.0 MH0
9.168
H
H13
3zoo 1 P99999 99.04 7e-73 X-RAY
2013-10-23 ALA A:96 A:96 23.0 0.2 H -61.2 -46.2 23.0 0.2 0.0 HEC
HOH
9.639
2.709
N
O
CMB
O
ALA B:96 B:96 18.0 0.157 H -57.3 -43.6 NA NA NA
ALA C:96 C:96 21.0 0.183 H -62.8 -41.7 NA NA NA
ALA D:96 D:96 24.0 0.209 H -57.9 -43.8 NA NA NA
5ty3 1 P99999 99.04 9e-73 X-RAY
2017-09-06 ALA A:96 A:96 18.0 0.157 H -59.9 -41.5 18.0 0.157 0.0 HEC
HOH
9.160
2.657
N
HA
HMB2
O
ALA B:96 B:96 18.0 0.157 H -58.8 -43.6 NA NA NA
6xnk 1 P99999 99.04 9e-73 X-RAY
2021-07-07 ALA A:96 A:96 57.0 0.496 H -60.3 -46.6 22.0 0.191 0.305 B:P99999:0.304
HEC
HOH
9.362
2.628
N
O
HMB1
O
ALA B:96 C:96 63.0 0.548 H -64.4 -42.4 24.0 0.209 0.339 A:P99999:0.339
HEC
HOH
9.340
3.129
N
HB1
HMB1
O
ALA C:96 E:96 60.0 0.522 H -62.7 -42.5 NA NA NA
ALA D:96 G:96 63.0 0.548 H -62.1 -46.0 NA NA NA
3nwv 1 P99999 99.04 1e-72 X-RAY
2011-03-09 ALA A:96 A:96 20.0 0.174 H -60.4 -44.0 20.0 0.174 0.0 HEC
HOH
9.561
2.583
N
O
CMB
O
ALA B:96 B:96 20.0 0.174 H -64.1 -41.2 NA NA NA
ALA C:96 C:96 26.0 0.226 H -60.4 -42.8 NA NA NA
ALA D:96 D:96 23.0 0.2 H -59.3 -46.1 NA NA NA
5exq 1 P99999 99.04 1e-72 X-RAY
2016-11-30 ALA A:96 A:96 21.0 0.183 H -63.2 -41.2 21.0 0.183 0.0 HEC
HOH
9.332
2.709
N
O
CMB
O
ALA B:96 B:96 19.0 0.165 H -61.3 -42.3 NA NA NA
5o10 1 P99999 99.04 1e-72 X-RAY
2018-03-28 ALA A:96 A:96 18.0 0.157 H -59.9 -42.6 18.0 0.157 0.0 HEC
HOH
9.486
2.712
N
O
CMB
O
ALA B:96 B:96 20.0 0.174 H -62.9 -41.3 20.0 0.174 0.0 HEC
HOH
9.533
2.804
N
O
CMB
O
6duj 1 P99999 99.04 1e-72 X-RAY
2019-06-26 ALA A:96 A:96 25.0 0.217 H -61.6 -44.0 25.0 0.217 0.0 HEC
HOH
9.305
8.890
N
O
HMB3
O
ALA B:96 C:96 19.0 0.165 H -58.4 -47.3 NA NA NA
6ecj 1 P99999 99.04 2e-72 X-RAY
2019-08-14 ALA A:96 A:96 21.0 0.183 H -62.8 -39.4 21.0 0.183 0.0 HEC
HOH
9.458
4.323
N
CB
CMB
O
ALA B:96 B:96 14.0 0.122 H -63.1 -39.6 NA NA NA
ALA C:96 C:96 17.0 0.148 H -63.2 -39.6 NA NA NA
ALA D:96 D:96 23.0 0.2 H -63.1 -39.8 NA NA NA
ALA E:96 E:96 22.0 0.191 H -62.6 -39.6 NA NA NA
ALA F:96 F:96 21.0 0.183 H -62.7 -39.6 NA NA NA
ALA G:96 G:96 21.0 0.183 H -62.5 -39.2 NA NA NA
ALA H:96 H:96 34.0 0.296 H -63.2 -36.0 NA NA NA
5dfs 1 P00003 95.24 3e-71 X-RAY
2016-03-02 ALA A:97 A:96 19.0 0.165 H -64.7 -39.8 19.0 0.165 0.0 HEC
EDO
CL
HOH
9.248
5.794
8.638
2.752
N
HB2
HA
O
HMB1
H22
CL
O
ALA B:97 B:96 21.0 0.183 H -61.5 -41.4 NA NA NA
5c0z 1 P62898 91.43 7e-68 X-RAY
2016-09-21 ALA A:97 A:96 15.0 0.13 H -60.3 -42.1 15.0 0.13 0.0 HEC
HOH
9.613
2.861
N
O
CMB
O
ALA B:97 B:96 16.0 0.139 H -63.5 -38.6 NA NA NA
ALA C:97 C:96 19.0 0.165 H -61.4 -40.5 NA NA NA
ALA D:97 D:96 19.0 0.165 H -62.2 -43.3 NA NA NA
5c9m 1 P62898 90.48 3e-67 X-RAY
2016-09-21 ALA A:97 A:96 16.0 0.139 H -58.7 -41.0 16.0 0.139 0.0 HEC
HOH
9.592
2.800
N
O
CMB
O
ALA B:97 B:96 18.0 0.157 H -61.0 -41.1 NA NA NA
ALA C:97 C:96 21.0 0.183 H -58.6 -42.4 NA NA NA
ALA D:97 D:96 19.0 0.165 H -63.6 -42.6 NA NA NA
7ljx 1 P62898 90.38 1e-66 X-RAY
2021-05-12 ALA A:96 A:96 23.0 0.2 H -62.7 -41.1 23.0 0.2 0.0 HEC
HOH
9.661
2.840
N
O
CMB
O
ALA B:96 B:96 19.0 0.165 H -63.1 -41.2 NA NA NA
2b4z 1 P62894 90.38 2e-66 X-RAY
2005-10-11 ALA A:96 A:96 18.0 0.157 H -64.3 -41.4 18.0 0.157 0.0 HEM
HOH
9.599
2.753
N
O
CMB
O
2ybb 33 P62894 90.38 2e-66 EM
2011-10-19 ALA GA:96 Y:96 18.0 0.157 H -64.3 -41.3 18.0 0.157 0.0 HEM
HOH
9.598
2.752
N
O
CMB
O
3j2t 2 P62894 90.38 2e-66 EM
2013-04-10 ALA H:96 H:96 17.0 0.148 H -64.2 -41.5 17.0 0.148 0.0 HEM
9.599
N
CMB
ALA I:96 I:96 17.0 0.148 H -64.2 -41.6 17.0 0.148 0.0 HEM
9.599
N
CMB
ALA J:96 J:96 17.0 0.148 H -64.2 -41.5 17.0 0.148 0.0 HEM
9.599
N
CMB
ALA K:96 K:96 17.0 0.148 H -64.2 -41.5 17.0 0.148 0.0 HEM
9.599
N
CMB
ALA L:96 L:96 18.0 0.157 H -64.2 -41.5 18.0 0.157 0.0 HEM
9.599
N
CMB
ALA M:96 M:96 18.0 0.157 H -64.1 -41.6 18.0 0.157 0.0 HEM
9.600
N
CMB
ALA N:96 N:96 17.0 0.148 H -64.2 -41.6 17.0 0.148 0.0 HEM
9.599
N
CMB
5juy 2 P62894 90.38 2e-66 EM
2016-10-19 ALA H:96 H:96 12.0 0.104 H -62.5 -48.9 12.0 0.104 0.0 HEC
9.468
N
CMB
ALA I:96 I:96 12.0 0.104 H -62.5 -48.9 12.0 0.104 0.0 HEC
9.469
N
CMB
ALA J:96 J:96 12.0 0.104 H -62.5 -48.9 12.0 0.104 0.0 HEC
9.469
N
CMB
ALA K:96 K:96 13.0 0.113 H -62.5 -48.8 13.0 0.113 0.0 HEC
9.469
N
CMB
ALA L:96 L:96 13.0 0.113 H -62.5 -48.8 13.0 0.113 0.0 HEC
9.469
N
CMB
ALA M:96 M:96 12.0 0.104 H -62.5 -48.9 12.0 0.104 0.0 HEC
9.468
N
CMB
ALA N:96 N:96 12.0 0.104 H -62.5 -48.8 12.0 0.104 0.0 HEC
9.469
N
CMB
6ff5 1 P62894 90.38 2e-66 X-RAY
2018-03-21 ALA A:96 A:96 24.0 0.209 H -63.2 -37.4 24.0 0.209 0.0 HEC
SO4
HOH
9.752
7.965
2.815
N
O
O
CMB
O4
O
6n1o 1 P62898 90.38 4e-66 X-RAY
2019-10-23 ALA A:96 A:96 18.0 0.157 H -59.5 -45.0 18.0 0.157 0.0 HEC
HOH
9.533
2.828
N
O
CMB
O
ALA B:96 B:96 17.0 0.148 H -59.4 -45.7 NA NA NA
ALA C:96 C:96 18.0 0.157 H -60.3 -45.2 NA NA NA
ALA D:96 D:96 20.0 0.174 H -59.3 -45.0 NA NA NA
3jbt 2 P00004 88.57 4e-66 EM
2015-11-18 ALA B:97 B:96 21.0 0.183 H -62.4 -42.6 21.0 0.183 0.0 HEM
9.672
N
CMB
ALA D:97 D:96 22.0 0.191 H -62.5 -42.6 22.0 0.191 0.0 HEM
9.672
N
CMB
ALA F:97 F:96 21.0 0.183 H -62.6 -42.6 21.0 0.183 0.0 HEM
9.671
N
CMB
ALA H:97 H:96 22.0 0.191 H -62.5 -42.6 22.0 0.191 0.0 HEM
9.671
N
CMB
ALA J:97 J:96 23.0 0.2 H -62.5 -42.6 23.0 0.2 0.0 HEM
9.672
N
CMB
ALA L:97 L:96 22.0 0.191 H -62.4 -42.6 22.0 0.191 0.0 HEM
9.672
N
CMB
ALA N:97 N:96 22.0 0.191 H -62.4 -42.6 22.0 0.191 0.0 HEM
9.672
N
CMB
5wve 2 P00004 88.57 4e-66 EM
2017-02-08 ALA B:97 B:96 22.0 0.191 H -62.3 -42.7 22.0 0.191 0.0 HEM
9.673
N
CMB
ALA D:97 D:96 22.0 0.191 H -62.5 -42.6 22.0 0.191 0.0 HEM
9.673
N
CMB
ALA F:97 F:96 23.0 0.2 H -62.6 -42.6 23.0 0.2 0.0 HEM
9.672
N
CMB
ALA H:97 H:96 23.0 0.2 H -62.4 -42.6 23.0 0.2 0.0 HEM
9.673
N
CMB
ALA J:97 J:96 22.0 0.191 H -62.4 -42.6 22.0 0.191 0.0 HEM
9.671
N
CMB
ALA L:97 L:96 21.0 0.183 H -62.5 -42.5 21.0 0.183 0.0 HEM
9.671
N
CMB
ALA N:97 N:96 22.0 0.191 H -62.5 -42.6 22.0 0.191 0.0 HEM
9.671
N
CMB
5df5 1 P62898 90.38 5e-66 X-RAY
2016-09-14 ALA A:96 A:96 16.0 0.139 H -59.0 -42.5 16.0 0.139 0.0 HEC
HOH
9.625
2.776
N
O
CMB
O
ALA B:96 B:96 14.0 0.122 H -61.4 -42.9 NA NA NA
ALA C:96 C:96 19.0 0.165 H -61.5 -42.8 NA NA NA
ALA D:96 D:96 20.0 0.174 H -63.9 -39.9 NA NA NA
1ocd 1 P00004 88.46 3e-65 NMR
1997-06-16 ALA A:96 A:96 24.0 0.209 H -35.8 -61.8 24.0 0.209 0.0 HEC
HOH
9.102
5.409
N
N
HMB3
H1
1u75 2 P00004 88.46 3e-65 X-RAY
2004-09-28 ALA B:96 B:96 23.0 0.2 H -58.9 -50.4 23.0 0.2 0.0 HEC
HOH
9.828
4.896
N
CB
CMB
O
2frc 1 P00004 88.46 3e-65 NMR
1997-07-29 ALA A:96 A:96 4.0 0.035 H -78.5 -35.8 4.0 0.035 0.0 HEC
HOH
8.190
6.182
H
N
HMB3
H1
2n3b 1 P00004 88.46 3e-65 NMR
2015-10-28 ALA A:96 A:96 10.0 0.087 H -66.2 -34.0 10.0 0.087 0.0 HEC
HOH
8.764
5.352
H
N
HMB3
O
2pcb 2 P00004 88.46 3e-65 X-RAY
1993-07-15 ALA B:96 B:96 10.0 0.087 H -52.2 -79.0 10.0 0.087 0.0 HEM
HOH
9.493
4.425
N
CB
CMB
O
3nbs 1 P00004 88.46 3e-65 X-RAY
2010-07-14 ALA A:96 A:96 61.0 0.53 H -65.2 -41.9 22.0 0.191 0.339 B:P00004:0.339
HEC
HOH
9.528
2.752
N
O
CMB
O
ALA B:96 B:96 62.0 0.539 H -62.9 -46.9 22.0 0.191 0.348 A:P00004:0.348
HEC
HOH
9.656
4.493
N
CB
CMB
O
ALA C:96 C:96 58.0 0.504 H -64.5 -47.8 NA NA NA
ALA D:96 D:96 59.0 0.513 H -63.4 -42.7 NA NA NA
3nbt 1 P00004 88.46 3e-65 X-RAY
2010-07-14 ALA A:96 A:96 62.0 0.539 H -62.6 -53.2 18.0 0.157 0.382 F:P00004:0.383
HEC
HOH
9.457
2.771
N
O
CMB
O
ALA B:96 B:96 60.0 0.522 H -60.0 -46.9 NA NA NA
ALA C:96 C:96 62.0 0.539 H -66.0 -37.7 NA NA NA
ALA D:96 D:96 61.0 0.53 H -62.3 -43.2 NA NA NA
ALA E:96 E:96 58.0 0.504 H -66.5 -42.0 18.0 0.157 0.347 A:P00004:0.348
HEC
HOH
9.436
2.616
N
O
CMB
O
ALA F:96 F:96 57.0 0.496 H -63.3 -38.7 15.0 0.13 0.366 E:P00004:0.365
HEC
HOH
9.490
2.628
N
O
CMB
O
3wc8 1 P00004 88.46 3e-65 X-RAY
2013-12-11 ALA A:96 A:96 62.0 0.539 H -61.7 -45.6 24.0 0.209 0.33 A:P00004:0.33
HEC
PO4
HOH
9.534
7.874
5.856
N
O
CB
CMB
O3
O
3wui 1 P00004 88.46 3e-65 X-RAY
2014-07-16 ALA A:96 A:96 60.0 0.522 H -59.5 -47.4 19.0 0.165 0.357 A:P00004:0.357
HEC
PO4
HOH
9.461
7.847
2.676
N
O
O
CMB
O3
O
4rsz 1 P00004 88.46 3e-65 X-RAY
2015-01-14 ALA A:96 A:96 21.0 0.183 H -62.4 -42.6 21.0 0.183 0.0 HEC
CPT
HOH
9.665
6.119
9.217
N
N
O
CMB
N2
O
ALA B:96 B:96 20.0 0.174 H -64.8 -42.4 NA NA NA
ALA C:96 C:96 23.0 0.2 H -62.0 -42.8 NA NA NA
ALA D:96 D:96 23.0 0.2 H -63.1 -44.3 NA NA NA
ALA E:96 E:96 17.0 0.148 H -63.0 -43.1 NA NA NA
ALA F:96 F:96 24.0 0.209 H -63.4 -43.5 NA NA NA
6suv 1 P00004 88.46 3e-65 X-RAY
2020-07-22 ALA A:96 AaA:96 20.0 0.174 H -61.4 -43.1 20.0 0.174 0.0 ACE
HEC
HOH
4.839
9.551
2.418
CB
N
O
CH3
CMB
O
ALA B:96 BaB:96 21.0 0.183 H -62.1 -43.0 NA NA NA
ALA C:96 CaC:96 20.0 0.174 H -62.0 -42.8 NA NA NA
ALA D:96 DaD:96 19.0 0.165 H -62.0 -42.7 NA NA NA
ALA E:96 EaE:96 18.0 0.157 H -61.5 -43.2 NA NA NA
ALA F:96 FaF:96 17.0 0.148 H -61.7 -43.1 NA NA NA
ALA G:96 GaG:96 20.0 0.174 H -62.2 -41.9 NA NA NA
ALA H:96 HaH:96 19.0 0.165 H -61.7 -43.2 NA NA NA
1crc 1 P00004 88.46 3e-65 X-RAY
1996-03-08 ALA A:97 A:96 20.0 0.174 H -60.9 -44.2 20.0 0.174 0.0 HEC
HOH
9.603
3.708
N
N
CMB
O
ALA B:97 B:96 20.0 0.174 H -62.0 -59.9 NA NA NA
1hrc 1 P00004 88.46 3e-65 X-RAY
1994-11-01 ALA A:97 A:96 24.0 0.209 H -63.9 -38.5 24.0 0.209 0.0 HEC
HOH
9.793
2.944
N
O
CMB
O
1wej 3 P00004 88.46 3e-65 X-RAY
1998-12-09 ALA C:97 F:96 16.0 0.139 H -62.5 -38.8 10.0 0.087 0.052 A:2072141:0.052
HEM
HOH
9.508
3.485
N
CB
CMB
O
3o1y 1 P00004 88.46 3e-65 X-RAY
2012-01-25 ALA A:97 A:96 20.0 0.174 H -58.2 -44.0 20.0 0.174 0.0 HEC
NO3
NO3
HOH
9.575
9.170
7.918
2.711
N
C
O
O
CMB
O3
O3
O
ALA B:97 B:96 20.0 0.174 H -61.7 -42.8 NA NA NA
ALA C:97 C:96 20.0 0.174 H -58.8 -42.8 NA NA NA
3o20 1 P00004 88.46 3e-65 X-RAY
2012-01-25 ALA A:97 A:96 24.0 0.209 H -59.6 -45.6 24.0 0.209 0.0 HEC
HOH
9.634
2.541
N
O
CMB
O
ALA B:97 B:96 20.0 0.174 H -55.9 -43.0 NA NA NA
ALA C:97 C:96 18.0 0.157 H -57.3 -41.9 NA NA NA
5iy5 14 P00004 88.46 3e-65 X-RAY
2017-01-11 ALA AA:97 1:96 11.0 0.096 H -58.1 -32.9 11.0 0.096 0.0 HEC
HOH
9.786
7.229
N
CB
CMB
O
ALA BA:97 2:96 24.0 0.209 H -64.8 -48.0 NA NA NA
6k9i 1 P00004 88.46 3e-65 X-RAY
2020-06-17 ALA A:97 A:96 20.0 0.174 H -61.9 -43.0 20.0 0.174 0.0 HEC
HOH
9.722
2.608
N
O
CMB
O
6k9j 1 P00004 88.46 3e-65 X-RAY
2020-06-17 ALA A:97 A:96 19.0 0.165 H -61.5 -44.1 19.0 0.165 0.0 HEC
HOH
9.559
2.772
N
O
CMB
O
5zkv 1 P00004 87.5 6e-64 NMR
2019-05-22 ALA A:96 A:96 54.0 0.47 H -56.9 -48.3 54.0 0.47 0.0 HEC
9.219
H
HMB2
4nfg 2 P00004 85.58 5e-63 X-RAY
2014-09-24 ALA B:96 B:96 23.0 0.2 H -66.4 -39.4 23.0 0.2 0.0 HEC
HOH
9.616
2.676
N
O
CMB
O
2aiu 1 P00015 83.65 2e-62 X-RAY
2006-07-18 LYS A:97 A:97 66.0 0.33 H -57.9 -45.8 66.0 0.33 0.0 HEM
HOH
9.272
2.480
N
NZ
CMB
O
1cyc 1 P00025 80.58 3e-58 X-RAY
1976-10-06 ALA A:96 A:96 21.0 0.183 H -66.4 -37.3 21.0 0.183 0.0 HEC
9.731
N
CMB
ALA B:96 B:96 21.0 0.183 H -66.4 -37.3 NA NA NA
1i54 1 P81459 80.58 3e-58 X-RAY
2001-05-09 ALA A:96 A:96 17.0 0.148 H -59.7 -44.2 17.0 0.148 0.0 HEC
ZNH
HOH
9.417
9.419
2.638
N
N
O
CMB
CMB
O
ALA B:96 B:96 18.0 0.157 H -63.7 -39.9 NA NA NA
1i55 1 P81459 80.58 3e-58 X-RAY
2001-05-09 ALA A:96 A:96 17.0 0.148 H -59.4 -42.5 17.0 0.148 0.0 HEC
ZNH
HOH
9.354
9.364
2.578
N
N
O
CMB
CMB
O
ALA B:96 B:96 20.0 0.174 H -63.2 -39.1 NA NA NA
1lfm 1 P81459 80.58 3e-58 X-RAY
2002-07-19 ALA A:96 A:96 15.0 0.13 H -58.5 -43.7 15.0 0.13 0.0 COH
HOH
9.518
2.757
N
O
CMB
O
ALA B:96 B:96 17.0 0.148 H -62.0 -38.8 NA NA NA
3cyt 1 P81459 80.58 3e-58 X-RAY
1980-09-16 ALA A:97 O:96 18.0 0.157 H -67.1 -37.1 18.0 0.157 0.0 HEC
HOH
9.443
7.466
N
CB
CMB
O
ALA B:97 I:96 25.0 0.217 H -76.1 -25.2 NA NA NA
5cyt 1 P81459 80.58 3e-58 X-RAY
1989-07-12 ALA A:97 R:96 26.0 0.226 H -63.3 -40.5 26.0 0.226 0.0 HEC
HOH
9.621
2.786
N
O
CMB
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p99999-f1 1 P99999 100.0 1e-74 ALA A:97 A:97 23.0 0.2 H -59.6 -44.3