Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 25163584 . G A CCDS5393.1:NM_018947.5:c.155gCc>gTc_NP_061820.1:p.52A>V Homo sapiens cytochrome c, somatic (CYCS), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9i 1 P99999 100.0 2e-73 NMR
2016-02-17 ALA A:51 A:51 2.0 0.017 H -97.0 -15.8 2.0 0.017 0.0 HEC
4.175
C
O2D
2n9j 1 P99999 100.0 2e-73 NMR
2016-02-17 ALA A:51 A:51 35.0 0.304 T -95.8 -39.3 35.0 0.304 0.0 HEC
6.026
HB3
HBD2
3zcf 1 P99999 100.0 2e-73 X-RAY
2013-10-23 ALA A:51 A:51 27.0 0.235 H -55.7 -52.4 27.0 0.235 0.0 HEC
HOH
5.535
3.010
CB
N
O1D
O
ALA B:51 B:51 32.0 0.278 H -57.3 -49.7 NA NA NA
ALA C:51 C:51 29.0 0.252 H -58.5 -51.2 NA NA NA
ALA D:51 D:51 31.0 0.27 H -58.2 -48.7 NA NA NA
2n3y 1 P99999 99.04 7e-73 NMR
2016-12-14 ALA A:51 A:51 27.0 0.235 H -54.9 -31.2 27.0 0.235 0.0 MH0
7.044
H
O1D
3zoo 1 P99999 99.04 7e-73 X-RAY
2013-10-23 ALA A:51 A:51 28.0 0.243 H -56.6 -53.3 28.0 0.243 0.0 HEC
HOH
5.551
2.937
CB
N
O1D
O
ALA B:51 B:51 30.0 0.261 H -58.1 -48.5 NA NA NA
ALA C:51 C:51 29.0 0.252 H -62.9 -50.1 NA NA NA
ALA D:51 D:51 32.0 0.278 H -60.1 -45.7 NA NA NA
5ty3 1 P99999 99.04 9e-73 X-RAY
2017-09-06 ALA A:51 A:51 28.0 0.243 H -60.1 -45.4 28.0 0.243 0.0 HEC
SO4
HOH
4.716
3.595
2.200
HB3
H
H
O1D
O2
O
ALA B:51 B:51 30.0 0.261 H -59.8 -46.5 NA NA NA
6xnk 1 P99999 99.04 9e-73 X-RAY
2021-07-07 ALA A:51 A:51 37.0 0.322 H -95.1 129.1 37.0 0.322 0.0 HEC
HOH
2.940
8.470
O
O
O2D
O
ALA B:51 C:51 55.0 0.478 T -88.2 81.4 55.0 0.478 0.0 HEC
HOH
4.188
2.939
O
HA
O1D
O
ALA C:51 E:51 39.0 0.339 S -92.5 126.3 NA NA NA
ALA D:51 G:51 47.0 0.409 S -93.7 -177.2 NA NA NA
3nwv 1 P99999 99.04 1e-72 X-RAY
2011-03-09 ALA A:51 A:51 27.0 0.235 H -55.2 -49.1 27.0 0.235 0.0 HEC
HOH
5.541
2.742
CB
O
O2D
O
ALA B:51 B:51 27.0 0.235 H -53.4 -50.5 NA NA NA
ALA C:51 C:51 31.0 0.27 H -58.7 -47.9 NA NA NA
ALA D:51 D:51 33.0 0.287 H -65.2 -42.6 NA NA NA
5exq 1 P99999 99.04 1e-72 X-RAY
2016-11-30 ALA A:51 A:51 28.0 0.243 H -60.1 -47.3 28.0 0.243 0.0 HEC
HOH
5.608
2.996
CB
N
O2D
O
ALA B:51 B:51 26.0 0.226 H -60.0 -47.5 NA NA NA
5o10 1 P99999 99.04 1e-72 X-RAY
2018-03-28 ALA A:51 A:51 25.0 0.217 H -62.5 -46.3 9.0 0.078 0.139 B:P99999:0.139
HEC
HEC
HOH
5.693
8.120
3.014
C
O
N
O1D
CBC
O
ALA B:51 B:51 29.0 0.252 H -60.2 -47.3 29.0 0.252 0.0 HEC
HOH
5.652
2.972
C
N
O1D
O
6duj 1 P99999 99.04 1e-72 X-RAY
2019-06-26 VAL A:51 A:51 61.0 0.394 H -68.2 -42.4 61.0 0.394 0.0 HEC
HOH
4.193
2.777
HG23
O
O1D
O
VAL B:51 C:51 60.0 0.387 H -68.7 -39.8 NA NA NA
6ecj 1 P99999 99.04 2e-72 X-RAY
2019-08-14 ALA A:51 A:51 22.0 0.191 H -64.2 -44.2 22.0 0.191 0.0 HEC
5.604
CB
O2D
ALA B:51 B:51 18.0 0.157 H -63.2 -44.4 NA NA NA
ALA C:51 C:51 19.0 0.165 H -63.0 -44.2 NA NA NA
ALA D:51 D:51 20.0 0.174 H -63.3 -44.0 NA NA NA
ALA E:51 E:51 21.0 0.183 H -63.8 -44.0 NA NA NA
ALA F:51 F:51 22.0 0.191 H -63.3 -43.8 NA NA NA
ALA G:51 G:51 18.0 0.157 H -62.8 -43.9 NA NA NA
ALA H:51 H:51 22.0 0.191 H -64.2 -43.9 NA NA NA
5dfs 1 P00003 95.24 3e-71 X-RAY
2016-03-02 ALA A:52 A:51 24.0 0.209 H -59.6 -47.2 24.0 0.209 0.0 HEC
EDO
CL
HOH
4.650
6.599
4.198
2.213
HB3
O
H
H
O2D
H12
CL
O
ALA B:52 B:51 27.0 0.235 H -62.9 -49.0 NA NA NA
5c0z 1 P62898 91.43 7e-68 X-RAY
2016-09-21 ALA A:52 A:51 32.0 0.278 H -56.3 -49.0 32.0 0.278 0.0 HEC
HOH
5.547
4.655
CB
N
O1D
O
ALA B:52 B:51 30.0 0.261 H -56.2 -50.5 NA NA NA
ALA C:52 C:51 33.0 0.287 H -58.7 -51.0 NA NA NA
ALA D:52 D:51 31.0 0.27 H -60.6 -48.8 NA NA NA
5c9m 1 P62898 90.48 3e-67 X-RAY
2016-09-21 ALA A:52 A:51 33.0 0.287 H -57.0 -48.3 33.0 0.287 0.0 HEC
HOH
5.574
2.953
CB
O
O1D
O
ALA B:52 B:51 31.0 0.27 H -55.2 -49.6 NA NA NA
ALA C:52 C:51 32.0 0.278 H -56.8 -53.7 NA NA NA
ALA D:52 D:51 32.0 0.278 H -60.6 -48.0 NA NA NA
7ljx 1 P62898 90.38 1e-66 X-RAY
2021-05-12 ALA A:51 A:51 28.0 0.243 H -56.5 -51.5 28.0 0.243 0.0 HEC
HOH
5.531
2.728
CB
O
O1D
O
ALA B:51 B:51 31.0 0.27 H -58.6 -50.8 NA NA NA
2b4z 1 P62894 90.38 2e-66 X-RAY
2005-10-11 ALA A:51 A:51 33.0 0.287 H -57.5 -48.5 33.0 0.287 0.0 HEM
HOH
5.590
2.634
CB
O
O1D
O
2ybb 33 P62894 90.38 2e-66 EM
2011-10-19 ALA GA:51 Y:51 33.0 0.287 H -57.5 -48.6 33.0 0.287 0.0 HEM
HOH
5.589
2.634
CB
O
O2D
O
3j2t 2 P62894 90.38 2e-66 EM
2013-04-10 ALA H:51 H:51 33.0 0.287 H -57.5 -48.5 33.0 0.287 0.0 HEM
5.589
CB
O1D
ALA I:51 I:51 33.0 0.287 H -57.5 -48.5 33.0 0.287 0.0 HEM
5.589
CB
O1D
ALA J:51 J:51 34.0 0.296 H -57.4 -48.6 34.0 0.296 0.0 HEM
5.589
CB
O1D
ALA K:51 K:51 34.0 0.296 H -57.5 -48.6 34.0 0.296 0.0 HEM
5.589
CB
O1D
ALA L:51 L:51 33.0 0.287 H -57.5 -48.5 33.0 0.287 0.0 HEM
5.589
CB
O1D
ALA M:51 M:51 32.0 0.278 H -57.5 -48.5 32.0 0.278 0.0 HEM
5.589
CB
O1D
ALA N:51 N:51 33.0 0.287 H -57.5 -48.6 33.0 0.287 0.0 HEM
5.588
CB
O1D
5juy 2 P62894 90.38 2e-66 EM
2016-10-19 ALA H:51 H:51 31.0 0.27 H -60.6 -41.0 24.0 0.209 0.061 A:O14727:0.061
HEC
5.490
C
O1D
ALA I:51 I:51 32.0 0.278 H -60.5 -41.0 25.0 0.217 0.061 B:O14727:0.061
HEC
5.490
C
O1D
ALA J:51 J:51 32.0 0.278 H -60.6 -41.0 24.0 0.209 0.069 C:O14727:0.07
HEC
5.490
C
O1D
ALA K:51 K:51 32.0 0.278 H -60.6 -40.9 24.0 0.209 0.069 D:O14727:0.07
HEC
5.489
C
O1D
ALA L:51 L:51 31.0 0.27 H -60.6 -41.0 24.0 0.209 0.061 E:O14727:0.061
HEC
5.490
C
O1D
ALA M:51 M:51 31.0 0.27 H -60.5 -41.0 24.0 0.209 0.061 F:O14727:0.061
HEC
5.490
C
O1D
ALA N:51 N:51 31.0 0.27 H -60.6 -40.9 24.0 0.209 0.061 G:O14727:0.061
HEC
5.490
C
O1D
6ff5 1 P62894 90.38 2e-66 X-RAY
2018-03-21 ALA A:51 A:51 31.0 0.27 H -47.3 -51.1 31.0 0.27 0.0 HEC
HOH
5.491
2.656
CB
O
O1D
O
6n1o 1 P62898 90.38 4e-66 X-RAY
2019-10-23 ALA A:51 A:51 31.0 0.27 H -59.3 -49.6 31.0 0.27 0.0 HEC
HOH
5.513
2.758
CB
O
O1D
O
ALA B:51 B:51 32.0 0.278 H -58.7 -50.3 NA NA NA
ALA C:51 C:51 32.0 0.278 H -57.9 -52.0 NA NA NA
ALA D:51 D:51 32.0 0.278 H -59.9 -49.6 NA NA NA
3jbt 2 P00004 88.57 4e-66 EM
2015-11-18 ALA B:52 B:51 35.0 0.304 H -59.1 -53.5 23.0 0.2 0.104 A:O14727:0.104
HEM
5.890
C
O2D
ALA D:52 D:51 34.0 0.296 H -59.1 -53.5 23.0 0.2 0.096 C:O14727:0.096
HEM
5.890
C
O2D
ALA F:52 F:51 34.0 0.296 H -59.0 -53.5 23.0 0.2 0.096 E:O14727:0.096
HEM
5.889
C
O2D
ALA H:52 H:51 35.0 0.304 H -59.0 -53.5 24.0 0.209 0.095 G:O14727:0.096
HEM
5.890
C
O2D
ALA J:52 J:51 35.0 0.304 H -59.1 -53.5 24.0 0.209 0.095 I:O14727:0.096
HEM
5.889
C
O2D
ALA L:52 L:51 35.0 0.304 H -59.1 -53.5 24.0 0.209 0.095 K:O14727:0.096
HEM
5.889
C
O2D
ALA N:52 N:51 35.0 0.304 H -59.1 -53.4 23.0 0.2 0.104 M:O14727:0.104
HEM
5.890
C
O2D
5wve 2 P00004 88.57 4e-66 EM
2017-02-08 ALA B:52 B:51 37.0 0.322 H -59.1 -53.4 25.0 0.217 0.105 A:O14727:0.104
HEM
5.889
C
O2D
ALA D:52 D:51 35.0 0.304 H -59.1 -53.5 23.0 0.2 0.104 C:O14727:0.104
HEM
5.891
C
O2D
ALA F:52 F:51 36.0 0.313 H -59.0 -53.4 24.0 0.209 0.104 E:O14727:0.104
HEM
5.888
C
O2D
ALA H:52 H:51 36.0 0.313 H -59.0 -53.5 24.0 0.209 0.104 G:O14727:0.104
HEM
5.890
C
O2D
ALA J:52 J:51 35.0 0.304 H -59.1 -53.5 24.0 0.209 0.095 I:O14727:0.096
HEM
5.891
C
O2D
ALA L:52 L:51 35.0 0.304 H -59.1 -53.5 23.0 0.2 0.104 K:O14727:0.104
HEM
5.890
C
O2D
ALA N:52 N:51 36.0 0.313 H -59.1 -53.5 22.0 0.191 0.122 M:O14727:0.122
HEM
5.890
C
O2D
5df5 1 P62898 90.38 5e-66 X-RAY
2016-09-14 ALA A:51 A:51 32.0 0.278 H -58.2 -51.6 32.0 0.278 0.0 HEC
HOH
5.523
3.731
C
CB
O1D
O
ALA B:51 B:51 30.0 0.261 H -58.8 -50.1 NA NA NA
ALA C:51 C:51 34.0 0.296 H -55.9 -50.5 NA NA NA
ALA D:51 D:51 32.0 0.278 H -57.6 -48.9 NA NA NA
1ocd 1 P00004 88.46 3e-65 NMR
1997-06-16 ALA A:51 A:51 20.0 0.174 T -167.3 -57.2 20.0 0.174 0.0 HEC
HOH
5.577
2.649
H
HB1
HBD1
H2
1u75 2 P00004 88.46 3e-65 X-RAY
2004-09-28 ALA B:51 B:51 23.0 0.2 T 175.9 -40.8 23.0 0.2 0.0 HEC
HOH
6.416
6.578
CB
N
O2D
O
2frc 1 P00004 88.46 3e-65 NMR
1997-07-29 ALA A:51 A:51 53.0 0.461 H -52.7 -69.4 53.0 0.461 0.0 HEC
HOH
4.427
7.375
HB1
HB2
O2D
O
2n3b 1 P00004 88.46 3e-65 NMR
2015-10-28 ALA A:51 A:51 21.0 0.183 H -54.6 -40.9 21.0 0.183 0.0 HEC
5.785
HB1
O2D
2pcb 2 P00004 88.46 3e-65 X-RAY
1993-07-15 ALA B:51 B:51 38.0 0.33 H -42.7 -42.7 38.0 0.33 0.0 HEM
HOH
6.542
7.827
C
N
O1D
O
3nbs 1 P00004 88.46 3e-65 X-RAY
2010-07-14 ALA A:51 A:51 28.0 0.243 H -61.2 -49.8 28.0 0.243 0.0 HEC
PG4
HOH
5.395
6.305
2.600
CB
O
O
O2D
C8
O
ALA B:51 B:51 28.0 0.243 H -57.9 -57.0 28.0 0.243 0.0 HEC
HOH
5.358
2.447
CB
O
O2D
O
ALA C:51 C:51 31.0 0.27 H -63.7 -44.6 NA NA NA
ALA D:51 D:51 29.0 0.252 H -54.0 -54.5 NA NA NA
3nbt 1 P00004 88.46 3e-65 X-RAY
2010-07-14 ALA A:51 A:51 30.0 0.261 H -63.7 -50.0 30.0 0.261 0.0 HEC
PG4
PEG
HOH
5.529
6.266
7.886
2.772
C
O
N
O
O2D
C8
C1
O
ALA B:51 B:51 29.0 0.252 H -60.0 -59.1 NA NA NA
ALA C:51 C:51 31.0 0.27 H -63.6 -49.5 NA NA NA
ALA D:51 D:51 29.0 0.252 H -60.5 -55.8 NA NA NA
ALA E:51 E:51 30.0 0.261 H -61.8 -54.4 30.0 0.261 0.0 HEC
PG4
PEG
HOH
5.525
6.159
8.277
2.560
C
O
N
O
O2D
C8
C4
O
ALA F:51 F:51 30.0 0.261 H -64.4 -52.5 30.0 0.261 0.0 HEC
PG4
PGE
HOH
5.573
6.302
7.867
2.747
C
O
N
O
O2D
C6
C4
O
3wc8 1 P00004 88.46 3e-65 X-RAY
2013-12-11 ALA A:51 A:51 26.0 0.226 H -59.1 -47.1 26.0 0.226 0.0 HEC
PG4
PEG
HOH
5.485
7.016
8.188
2.891
CB
O
N
O
O2D
C7
C1
O
3wui 1 P00004 88.46 3e-65 X-RAY
2014-07-16 ALA A:51 A:51 28.0 0.243 H -59.8 -49.5 28.0 0.243 0.0 HEC
PG4
PEG
HOH
5.493
6.759
7.906
2.734
CB
O
N
O
O2D
O4
C4
O
4rsz 1 P00004 88.46 3e-65 X-RAY
2015-01-14 ALA A:51 A:51 35.0 0.304 H -59.1 -53.5 35.0 0.304 0.0 HEC
HOH
5.788
2.395
CB
O
O2D
O
ALA B:51 B:51 35.0 0.304 H -58.3 -53.6 NA NA NA
ALA C:51 C:51 33.0 0.287 H -59.1 -52.2 NA NA NA
ALA D:51 D:51 35.0 0.304 H -59.0 -52.9 NA NA NA
ALA E:51 E:51 34.0 0.296 H -59.3 -53.0 NA NA NA
ALA F:51 F:51 35.0 0.304 H -59.9 -53.6 NA NA NA
6suv 1 P00004 88.46 3e-65 X-RAY
2020-07-22 ALA A:51 AaA:51 33.0 0.287 H -64.3 -44.3 33.0 0.287 0.0 HEC
HOH
5.686
2.472
CB
N
O2D
O
ALA B:51 BaB:51 32.0 0.278 H -64.5 -44.0 NA NA NA
ALA C:51 CaC:51 31.0 0.27 H -64.7 -44.1 NA NA NA
ALA D:51 DaD:51 34.0 0.296 H -64.1 -44.2 NA NA NA
ALA E:51 EaE:51 32.0 0.278 H -65.2 -43.8 NA NA NA
ALA F:51 FaF:51 32.0 0.278 H -64.3 -44.3 NA NA NA
ALA G:51 GaG:51 33.0 0.287 H -64.6 -44.1 NA NA NA
ALA H:51 HaH:51 34.0 0.296 H -64.1 -44.0 NA NA NA
1crc 1 P00004 88.46 3e-65 X-RAY
1996-03-08 ALA A:52 A:51 28.0 0.243 H -51.7 -70.0 28.0 0.243 0.0 HEC
HOH
5.520
4.991
CB
N
O2D
O
ALA B:52 B:51 35.0 0.304 S -97.5 -31.8 NA NA NA
1hrc 1 P00004 88.46 3e-65 X-RAY
1994-11-01 ALA A:52 A:51 32.0 0.278 H -60.0 -40.1 32.0 0.278 0.0 HEC
HOH
6.004
2.965
CB
N
O2D
O
1wej 3 P00004 88.46 3e-65 X-RAY
1998-12-09 ALA C:52 F:51 33.0 0.287 H -60.8 -53.1 33.0 0.287 0.0 HEM
HOH
5.465
2.735
CB
O
O2D
O
3o1y 1 P00004 88.46 3e-65 X-RAY
2012-01-25 ALA A:52 A:51 31.0 0.27 H -57.4 -54.6 31.0 0.27 0.0 HEC
HOH
5.400
2.820
CB
O
O2D
O
ALA B:52 B:51 32.0 0.278 H -59.2 -55.8 NA NA NA
ALA C:52 C:51 30.0 0.261 H -53.2 -54.3 NA NA NA
3o20 1 P00004 88.46 3e-65 X-RAY
2012-01-25 ALA A:52 A:51 31.0 0.27 H -54.2 -50.8 31.0 0.27 0.0 HEC
NO3
HOH
5.443
6.593
2.853
C
CB
O
O2D
O3
O
ALA B:52 B:51 32.0 0.278 H -49.0 -49.7 NA NA NA
ALA C:52 C:51 28.0 0.243 H -57.2 -46.2 NA NA NA
5iy5 14 P00004 88.46 3e-65 X-RAY
2017-01-11 ALA AA:52 1:51 29.0 0.252 H -62.8 -40.5 29.0 0.252 0.0 HEC
HOH
5.661
6.063
CB
C
O2D
O
ALA BA:52 2:51 33.0 0.287 H -64.8 -53.8 NA NA NA
6k9i 1 P00004 88.46 3e-65 X-RAY
2020-06-17 ALA A:52 A:51 31.0 0.27 H -58.8 -48.0 31.0 0.27 0.0 HEC
HOH
5.710
3.186
C
N
O2D
O
6k9j 1 P00004 88.46 3e-65 X-RAY
2020-06-17 ALA A:52 A:51 31.0 0.27 H -59.9 -48.3 31.0 0.27 0.0 HEC
HOH
5.621
3.258
CB
N
O2D
O
5zkv 1 P00004 87.5 6e-64 NMR
2019-05-22 ALA A:51 A:51 10.0 0.087 H -70.5 -45.2 10.0 0.087 0.0 HEC
4.396
HB3
HBD1
4nfg 2 P00004 85.58 5e-63 X-RAY
2014-09-24 ALA B:51 B:51 35.0 0.304 H -60.2 -52.1 35.0 0.304 0.0 HEC
HOH
5.484
2.770
C
O
O1D
O
2aiu 1 P00015 83.65 2e-62 X-RAY
2006-07-18 ALA A:52 A:52 29.0 0.252 H -59.8 -47.6 29.0 0.252 0.0 HEM
HOH
5.580
2.859
C
N
O2D
O
1cyc 1 P00025 80.58 3e-58 X-RAY
1976-10-06 ALA A:51 A:51 7.0 0.061 T 103.1 124.7 7.0 0.061 0.0 HEC
HOH
5.058
6.656
CB
C
O2D
O
ALA B:51 B:51 7.0 0.061 T 103.1 124.7 NA NA NA
1i54 1 P81459 80.58 3e-58 X-RAY
2001-05-09 ALA A:51 A:51 29.0 0.252 H -62.9 -50.1 29.0 0.252 0.0 HEC
ZNH
HOH
5.608
5.597
3.166
C
C
N
O2D
O2D
O
ALA B:51 B:51 27.0 0.235 H -60.8 -51.1 NA NA NA
1i55 1 P81459 80.58 3e-58 X-RAY
2001-05-09 ALA A:51 A:51 30.0 0.261 H -61.1 -49.9 30.0 0.261 0.0 HEC
ZNH
HOH
5.622
5.602
3.136
C
C
N
O2D
O2D
O
ALA B:51 B:51 29.0 0.252 H -61.1 -50.0 NA NA NA
1lfm 1 P81459 80.58 3e-58 X-RAY
2002-07-19 ALA A:51 A:51 28.0 0.243 H -60.8 -47.2 28.0 0.243 0.0 COH
HOH
5.569
3.060
C
N
O2D
O
ALA B:51 B:51 29.0 0.252 H -59.7 -45.5 NA NA NA
3cyt 1 P81459 80.58 3e-58 X-RAY
1980-09-16 ALA A:52 O:51 22.0 0.191 H -75.6 -45.5 22.0 0.191 0.0 HEC
HOH
5.463
2.979
CB
N
O2D
O
ALA B:52 I:51 27.0 0.235 H -47.5 -57.6 NA NA NA
5cyt 1 P81459 80.58 3e-58 X-RAY
1989-07-12 ALA A:52 R:51 12.0 0.104 H -64.4 -46.6 12.0 0.104 0.0 HEC
HOH
5.581
2.759
CB
O
O2D
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p99999-f1 1 P99999 100.0 1e-74 ALA A:52 A:52 32.0 0.278 H -55.4 -45.7