Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 25163594 . A C CCDS5393.1:NM_018947.5:c.145Tac>Gac_NP_061820.1:p.49Y>D Homo sapiens cytochrome c, somatic (CYCS), mRNA.
pdb_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id
alphafold_id
label_asym_id
label_seq_id
label_comp_id
auth_asym_id
auth_seq_id

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2n9i 1 P99999 100.0 2e-73 NMR
2016-02-17 TYR A:48 A:48 29.0 0.126 -41.1 163.1 29.0 0.126 0.0 HEC
2.580
HE1
HAD1
2n9j 1 P99999 100.0 2e-73 NMR
2016-02-17 TYR A:48 A:48 39.0 0.17 -93.8 -168.3 39.0 0.17 0.0 HEC
2.199
HE2
O2A
3zcf 1 P99999 100.0 2e-73 X-RAY
2013-10-23 TYR A:48 A:48 37.0 0.161 -84.5 163.0 37.0 0.161 0.0 HEC
HOH
2.568
2.970
OH
N
O1A
O
TYR B:48 B:48 39.0 0.17 -84.9 163.0 NA NA NA
TYR C:48 C:48 28.0 0.122 -88.1 158.6 NA NA NA
TYR D:48 D:48 33.0 0.143 -84.2 162.6 NA NA NA
2n3y 1 P99999 99.04 7e-73 NMR
2016-12-14 1PA A:48 A:48 NA NA NA NA NA NA NA NA MH0
2.524
H
O2D
3zoo 1 P99999 99.04 7e-73 X-RAY
2013-10-23 TYR A:48 A:48 31.0 0.135 -86.0 158.5 31.0 0.135 0.0 HEC
HOH
2.630
2.977
OH
N
O1A
O
TYR B:48 B:48 33.0 0.143 -87.6 160.7 NA NA NA
TYR C:48 C:48 31.0 0.135 -96.9 157.1 NA NA NA
TYR D:48 D:48 39.0 0.17 -84.8 158.6 NA NA NA
5ty3 1 P99999 99.04 9e-73 X-RAY
2017-09-06 TYR A:48 A:48 26.0 0.113 -86.5 158.0 26.0 0.113 0.0 HEC
SO4
HOH
2.074
4.156
2.177
HH
O
H
O1A
O1
O
TYR B:48 B:48 22.0 0.096 -87.7 160.3 NA NA NA
6xnk 1 P99999 99.04 9e-73 X-RAY
2021-07-07 TYR A:48 A:48 39.0 0.17 -77.8 160.0 39.0 0.17 0.0 HEC
HOH
1.911
1.941
HH
H
O1A
O
TYR B:48 C:48 41.0 0.178 -82.7 163.8 41.0 0.178 0.0 HEC
HOH
1.958
2.157
HH
H
O1A
O
TYR C:48 E:48 52.0 0.226 -77.8 160.5 NA NA NA
TYR D:48 G:48 40.0 0.174 -77.8 163.8 NA NA NA
3nwv 1 P99999 99.04 1e-72 X-RAY
2011-03-09 TYR A:48 A:48 61.0 0.265 -80.2 161.3 61.0 0.265 0.0 HEC
HOH
2.690
2.764
OH
O
O1A
O
TYR B:48 B:48 56.0 0.243 -86.2 160.1 NA NA NA
TYR C:48 C:48 52.0 0.226 -88.5 166.0 NA NA NA
TYR D:48 D:48 48.0 0.209 -85.0 165.0 NA NA NA
5exq 1 P99999 99.04 1e-72 X-RAY
2016-11-30 HIS A:48 A:48 18.0 0.092 -79.4 160.0 18.0 0.092 0.0 HEC
HOH
3.259
2.985
ND1
N
O1D
O
HIS B:48 B:48 24.0 0.123 -79.6 160.2 NA NA NA
5o10 1 P99999 99.04 1e-72 X-RAY
2018-03-28 HIS A:48 A:48 20.0 0.103 -83.3 161.0 20.0 0.103 0.0 HEC
HOH
3.074
2.894
ND1
N
O2D
O
HIS B:48 B:48 22.0 0.113 -82.1 158.4 22.0 0.113 0.0 HEC
HOH
3.187
2.971
ND1
N
O2D
O
6duj 1 P99999 99.04 1e-72 X-RAY
2019-06-26 TYR A:48 A:48 36.0 0.157 -81.9 165.3 36.0 0.157 0.0 HEC
HOH
2.063
2.921
HH
HE1
O1A
O
TYR B:48 C:48 40.0 0.174 -77.0 153.8 NA NA NA
6ecj 1 P99999 99.04 2e-72 X-RAY
2019-08-14 TYR A:48 A:48 46.0 0.2 -83.4 169.6 46.0 0.2 0.0 HEC
HOH
2.688
3.917
OH
OH
O1A
O
TYR B:48 B:48 47.0 0.204 -82.7 166.7 NA NA NA
TYR C:48 C:48 43.0 0.187 -83.2 167.4 NA NA NA
TYR D:48 D:48 41.0 0.178 -83.1 166.2 NA NA NA
TYR E:48 E:48 42.0 0.183 -82.2 168.1 NA NA NA
TYR F:48 F:48 47.0 0.204 -82.4 167.1 NA NA NA
TYR G:48 G:48 47.0 0.204 -81.7 168.0 NA NA NA
TYR H:48 H:48 55.0 0.239 -82.4 166.9 NA NA NA
5dfs 1 P00003 95.24 3e-71 X-RAY
2016-03-02 TYR A:49 A:48 26.0 0.113 -87.0 161.3 26.0 0.113 0.0 HEC
CL
HOH
2.038
5.287
2.117
HH
O
H
O2A
CL
O
TYR B:49 B:48 29.0 0.126 -84.3 158.0 NA NA NA
5c0z 1 P62898 91.43 7e-68 X-RAY
2016-09-21 TYR A:49 A:48 35.0 0.152 -76.4 154.9 35.0 0.152 0.0 HEC
HOH
2.609
2.751
OH
O
O1A
O
TYR B:49 B:48 33.0 0.143 -77.8 155.0 NA NA NA
TYR C:49 C:48 30.0 0.13 -82.6 154.2 NA NA NA
TYR D:49 D:48 32.0 0.139 -82.6 153.6 NA NA NA
5c9m 1 P62898 90.48 3e-67 X-RAY
2016-09-21 TYR A:49 A:48 36.0 0.157 -76.4 155.9 36.0 0.157 0.0 HEC
HOH
2.620
2.694
OH
O
O1A
O
TYR B:49 B:48 32.0 0.139 -79.5 157.7 NA NA NA
TYR C:49 C:48 31.0 0.135 -86.9 156.4 NA NA NA
TYR D:49 D:48 29.0 0.126 -84.3 156.3 NA NA NA
7ljx 1 P62898 90.38 1e-66 X-RAY
2021-05-12 TYR A:48 A:48 20.0 0.087 -86.5 158.5 20.0 0.087 0.0 HEC
HOH
2.570
2.945
OH
N
O1A
O
TYR B:48 B:48 19.0 0.083 -85.6 157.2 NA NA NA
2b4z 1 P62894 90.38 2e-66 X-RAY
2005-10-11 TYR A:48 A:48 36.0 0.157 -82.3 161.0 36.0 0.157 0.0 HEM
HOH
2.614
3.076
OH
N
O2A
O
2ybb 33 P62894 90.38 2e-66 EM
2011-10-19 TYR GA:48 Y:48 36.0 0.157 -82.3 161.0 36.0 0.157 0.0 HEM
HOH
2.613
3.076
OH
N
O1A
O
3j2t 2 P62894 90.38 2e-66 EM
2013-04-10 TYR H:48 H:48 29.0 0.126 -82.2 161.1 27.0 0.117 0.009 A:O14727:0.009
HEM
2.613
OH
O2A
TYR I:48 I:48 30.0 0.13 -82.2 161.2 28.0 0.122 0.008 B:O14727:0.009
HEM
2.613
OH
O2A
TYR J:48 J:48 30.0 0.13 -82.2 161.1 28.0 0.122 0.008 C:O14727:0.009
HEM
2.613
OH
O2A
TYR K:48 K:48 28.0 0.122 -82.2 161.1 27.0 0.117 0.005 D:O14727:0.004
HEM
2.613
OH
O2A
TYR L:48 L:48 29.0 0.126 -82.2 161.1 28.0 0.122 0.004 E:O14727:0.004
HEM
2.613
OH
O2A
TYR M:48 M:48 29.0 0.126 -82.2 161.1 27.0 0.117 0.009 F:O14727:0.009
HEM
2.614
OH
O2A
TYR N:48 N:48 29.0 0.126 -82.2 161.1 28.0 0.122 0.004 G:O14727:0.004
HEM
2.614
OH
O2A
5juy 2 P62894 90.38 2e-66 EM
2016-10-19 TYR H:48 H:48 30.0 0.13 -83.3 153.9 30.0 0.13 0.0 HEC
3.136
CD1
O2D
TYR I:48 I:48 30.0 0.13 -83.3 153.9 30.0 0.13 0.0 HEC
3.136
CD1
O2D
TYR J:48 J:48 30.0 0.13 -83.4 153.9 30.0 0.13 0.0 HEC
3.136
CD1
O2D
TYR K:48 K:48 29.0 0.126 -83.3 153.9 29.0 0.126 0.0 HEC
3.136
CD1
O2D
TYR L:48 L:48 30.0 0.13 -83.3 153.9 30.0 0.13 0.0 HEC
3.136
CD1
O2D
TYR M:48 M:48 29.0 0.126 -83.3 153.9 29.0 0.126 0.0 HEC
3.135
CD1
O2D
TYR N:48 N:48 29.0 0.126 -83.3 153.9 29.0 0.126 0.0 HEC
3.136
CD1
O2D
6ff5 1 P62894 90.38 2e-66 X-RAY
2018-03-21 TYR A:48 A:48 27.0 0.117 -84.2 162.5 27.0 0.117 0.0 HEC
HOH
2.500
2.941
OH
N
O2A
O
6n1o 1 P62898 90.38 4e-66 X-RAY
2019-10-23 TYR A:48 A:48 30.0 0.13 -78.6 156.9 30.0 0.13 0.0 HEC
EDO
HOH
2.695
5.067
3.670
OH
OH
CD1
O1A
O2
O
TYR B:48 B:48 38.0 0.165 -78.6 157.9 NA NA NA
TYR C:48 C:48 23.0 0.1 -79.0 157.9 NA NA NA
TYR D:48 D:48 32.0 0.139 -79.5 157.6 NA NA NA
3jbt 2 P00004 88.57 4e-66 EM
2015-11-18 TYR B:49 B:48 21.0 0.091 -89.6 164.9 21.0 0.091 0.0 HEM
2.650
OH
O1A
TYR D:49 D:48 21.0 0.091 -89.6 164.9 21.0 0.091 0.0 HEM
2.651
OH
O1A
TYR F:49 F:48 21.0 0.091 -89.6 164.9 21.0 0.091 0.0 HEM
2.651
OH
O1A
TYR H:49 H:48 22.0 0.096 -89.6 164.9 22.0 0.096 0.0 HEM
2.650
OH
O1A
TYR J:49 J:48 21.0 0.091 -89.6 164.9 21.0 0.091 0.0 HEM
2.651
OH
O1A
TYR L:49 L:48 20.0 0.087 -89.6 164.9 20.0 0.087 0.0 HEM
2.650
OH
O1A
TYR N:49 N:48 21.0 0.091 -89.6 164.9 21.0 0.091 0.0 HEM
2.650
OH
O1A
5wve 2 P00004 88.57 4e-66 EM
2017-02-08 TYR B:49 B:48 20.0 0.087 -89.6 164.9 20.0 0.087 0.0 HEM
2.651
OH
O1A
TYR D:49 D:48 22.0 0.096 -89.6 164.9 22.0 0.096 0.0 HEM
2.651
OH
O1A
TYR F:49 F:48 21.0 0.091 -89.6 164.9 21.0 0.091 0.0 HEM
2.651
OH
O1A
TYR H:49 H:48 20.0 0.087 -89.6 164.9 20.0 0.087 0.0 HEM
2.649
OH
O1A
TYR J:49 J:48 22.0 0.096 -89.6 164.9 22.0 0.096 0.0 HEM
2.651
OH
O1A
TYR L:49 L:48 22.0 0.096 -89.6 164.9 22.0 0.096 0.0 HEM
2.651
OH
O1A
TYR N:49 N:48 21.0 0.091 -89.5 164.9 21.0 0.091 0.0 HEM
2.649
OH
O1A
5df5 1 P62898 90.38 5e-66 X-RAY
2016-09-14 TYR A:48 A:48 29.0 0.126 -80.1 157.1 29.0 0.126 0.0 HEC
HOH
2.637
2.708
OH
O
O1A
O
TYR B:48 B:48 34.0 0.148 -81.3 156.9 NA NA NA
TYR C:48 C:48 32.0 0.139 -80.7 152.4 NA NA NA
TYR D:48 D:48 35.0 0.152 -79.8 156.1 NA NA NA
1ocd 1 P00004 88.46 3e-65 NMR
1997-06-16 TYR A:48 A:48 13.0 0.057 -44.2 157.9 13.0 0.057 0.0 HEC
HOH
2.101
1.995
HA
HH
O2D
H2
1u75 2 P00004 88.46 3e-65 X-RAY
2004-09-28 TYR B:48 B:48 59.0 0.257 -70.1 167.8 59.0 0.257 0.0 HEC
HOH
3.304
4.260
CE2
O
O1A
O
2frc 1 P00004 88.46 3e-65 NMR
1997-07-29 TYR A:48 A:48 27.0 0.117 -31.7 158.8 27.0 0.117 0.0 HEC
HOH
2.138
2.484
HE2
OH
HAA2
O
2n3b 1 P00004 88.46 3e-65 NMR
2015-10-28 TYR A:48 A:48 46.0 0.2 -57.3 153.5 46.0 0.2 0.0 HEC
HOH
1.975
3.439
HH
HH
HBA1
H2
2pcb 2 P00004 88.46 3e-65 X-RAY
1993-07-15 TYR B:48 B:48 51.0 0.222 -51.8 172.7 51.0 0.222 0.0 HEM
HOH
3.006
4.069
CD1
O
O1D
O
3nbs 1 P00004 88.46 3e-65 X-RAY
2010-07-14 TYR A:48 A:48 38.0 0.165 -85.4 166.1 38.0 0.165 0.0 HEC
HOH
2.567
3.244
OH
CE2
O1A
O
TYR B:48 B:48 38.0 0.165 -86.5 175.3 38.0 0.165 0.0 HEC
HOH
2.696
3.733
OH
OH
O1A
O
TYR C:48 C:48 40.0 0.174 -94.8 163.3 NA NA NA
TYR D:48 D:48 25.0 0.109 -90.1 163.6 NA NA NA
3nbt 1 P00004 88.46 3e-65 X-RAY
2010-07-14 TYR A:48 A:48 34.0 0.148 -86.7 169.5 34.0 0.148 0.0 HEC
PEG
HOH
2.593
3.824
3.430
OH
O
OH
O1A
C1
O
TYR B:48 B:48 21.0 0.091 -92.8 171.6 NA NA NA
TYR C:48 C:48 26.0 0.113 -96.5 172.3 NA NA NA
TYR D:48 D:48 23.0 0.1 -91.6 166.4 NA NA NA
TYR E:48 E:48 32.0 0.139 -87.0 174.7 32.0 0.139 0.0 HEC
PEG
HOH
2.579
3.750
2.951
OH
O
N
O1A
C4
O
TYR F:48 F:48 37.0 0.161 -86.4 172.7 37.0 0.161 0.0 HEC
PGE
HOH
2.599
4.020
3.031
OH
C
N
O1A
C4
O
3wc8 1 P00004 88.46 3e-65 X-RAY
2013-12-11 TYR A:48 A:48 22.0 0.096 -87.2 164.9 22.0 0.096 0.0 HEC
PEG
PEG
HOH
2.585
3.830
7.639
2.896
OH
C
OH
N
O1A
C2
C3
O
3wui 1 P00004 88.46 3e-65 X-RAY
2014-07-16 TYR A:48 A:48 21.0 0.091 -84.3 165.3 21.0 0.091 0.0 HEC
PEG
HOH
2.501
3.419
2.979
OH
C
N
O1A
C4
O
4rsz 1 P00004 88.46 3e-65 X-RAY
2015-01-14 TYR A:48 A:48 27.0 0.117 -89.6 164.9 27.0 0.117 0.0 HEC
HOH
2.540
2.997
OH
N
O1A
O
TYR B:48 B:48 32.0 0.139 -88.8 162.4 NA NA NA
TYR C:48 C:48 28.0 0.122 -90.1 162.4 NA NA NA
TYR D:48 D:48 28.0 0.122 -87.8 162.6 NA NA NA
TYR E:48 E:48 26.0 0.113 -91.3 164.0 NA NA NA
TYR F:48 F:48 29.0 0.126 -88.3 163.5 NA NA NA
6suv 1 P00004 88.46 3e-65 X-RAY
2020-07-22 TYR A:48 AaA:48 24.0 0.104 -96.3 160.1 24.0 0.104 0.0 HEC
HOH
2.873
2.998
OH
OH
O1A
O
TYR B:48 BaB:48 38.0 0.165 -97.0 159.1 NA NA NA
TYR C:48 CaC:48 25.0 0.109 -96.5 160.2 NA NA NA
TYR D:48 DaD:48 36.0 0.157 -96.9 160.7 NA NA NA
TYR E:48 EaE:48 37.0 0.161 -96.8 158.3 NA NA NA
TYR F:48 FaF:48 34.0 0.148 -96.6 160.3 NA NA NA
TYR G:48 GaG:48 38.0 0.165 -96.6 158.3 NA NA NA
TYR H:48 HaH:48 37.0 0.161 -96.3 160.7 NA NA NA
1crc 1 P00004 88.46 3e-65 X-RAY
1996-03-08 TYR A:49 A:48 32.0 0.139 -73.4 153.4 32.0 0.139 0.0 HEC
HOH
2.895
3.475
OH
CD2
O1A
O
TYR B:49 B:48 29.0 0.126 -60.5 -177.3 NA NA NA
1hrc 1 P00004 88.46 3e-65 X-RAY
1994-11-01 TYR A:49 A:48 29.0 0.126 -95.3 162.2 29.0 0.126 0.0 HEC
HOH
2.690
2.882
OH
N
O1A
O
1wej 3 P00004 88.46 3e-65 X-RAY
1998-12-09 TYR C:49 F:48 25.0 0.109 -87.5 165.7 25.0 0.109 0.0 HEM
HOH
2.677
2.820
OH
O
O1A
O
3o1y 1 P00004 88.46 3e-65 X-RAY
2012-01-25 TYR A:49 A:48 26.0 0.113 -89.3 158.4 26.0 0.113 0.0 HEC
HOH
2.738
2.726
OH
O
O1A
O
TYR B:49 B:48 28.0 0.122 -82.1 157.9 NA NA NA
TYR C:49 C:48 29.0 0.126 -85.7 162.6 NA NA NA
3o20 1 P00004 88.46 3e-65 X-RAY
2012-01-25 TYR A:49 A:48 30.0 0.13 -88.7 156.0 30.0 0.13 0.0 HEC
NO3
HOH
2.484
5.683
2.919
OH
N
N
O1A
O2
O
TYR B:49 B:48 31.0 0.135 -90.0 153.7 NA NA NA
TYR C:49 C:48 31.0 0.135 -94.1 152.8 NA NA NA
5iy5 14 P00004 88.46 3e-65 X-RAY
2017-01-11 TYR AA:49 1:48 26.0 0.113 -79.8 161.0 26.0 0.113 0.0 HEC
HOH
3.094
5.054
CD1
N
O1D
O
TYR BA:49 2:48 26.0 0.113 -91.6 -156.8 NA NA NA
6k9i 1 P00004 88.46 3e-65 X-RAY
2020-06-17 TYR A:49 A:48 30.0 0.13 -85.7 158.5 30.0 0.13 0.0 HEC
HOH
2.554
3.281
OH
N
O1A
O
6k9j 1 P00004 88.46 3e-65 X-RAY
2020-06-17 TYR A:49 A:48 35.0 0.152 -88.0 161.8 35.0 0.152 0.0 HEC
HOH
2.612
2.631
OH
O
O1A
O
5zkv 1 P00004 87.5 6e-64 NMR
2019-05-22 TYR A:48 A:48 99.0 0.43 -73.7 159.0 99.0 0.43 0.0 HEC
5.174
HA
HAD2
4nfg 2 P00004 85.58 5e-63 X-RAY
2014-09-24 TYR B:48 B:48 31.0 0.135 -88.7 156.8 31.0 0.135 0.0 HEC
HOH
2.658
3.091
OH
N
O1A
O
2aiu 1 P00015 83.65 2e-62 X-RAY
2006-07-18 TYR A:49 A:49 29.0 0.126 -87.6 163.7 29.0 0.126 0.0 PO4
HEM
HOH
9.658
2.600
2.856
CA
OH
O
O4
O1A
O
1cyc 1 P00025 80.58 3e-58 X-RAY
1976-10-06 TYR A:48 A:48 75.0 0.326 113.3 154.6 75.0 0.326 0.0 HEC
HOH
2.017
6.325
CE2
OH
O2D
O
TYR B:48 B:48 75.0 0.326 113.3 154.6 NA NA NA
1i54 1 P81459 80.58 3e-58 X-RAY
2001-05-09 TYR A:48 A:48 26.0 0.113 -81.4 164.8 26.0 0.113 0.0 HEC
ZNH
HOH
2.680
2.689
2.762
OH
OH
O
O1A
O1A
O
TYR B:48 B:48 31.0 0.135 -88.1 165.0 NA NA NA
1i55 1 P81459 80.58 3e-58 X-RAY
2001-05-09 TYR A:48 A:48 26.0 0.113 -84.3 163.4 26.0 0.113 0.0 HEC
ZNH
HOH
2.709
2.694
2.814
OH
OH
O
O1A
O1A
O
TYR B:48 B:48 30.0 0.13 -88.3 166.5 NA NA NA
1lfm 1 P81459 80.58 3e-58 X-RAY
2002-07-19 TYR A:48 A:48 26.0 0.113 -84.0 159.3 26.0 0.113 0.0 COH
HOH
2.573
2.614
OH
O
O1A
O
TYR B:48 B:48 28.0 0.122 -84.9 159.2 NA NA NA
3cyt 1 P81459 80.58 3e-58 X-RAY
1980-09-16 TYR A:49 O:48 22.0 0.096 -84.1 166.9 22.0 0.096 0.0 HEC
HOH
3.025
2.857
OH
O
O1A
O
TYR B:49 I:48 25.0 0.109 -81.5 168.4 NA NA NA
5cyt 1 P81459 80.58 3e-58 X-RAY
1989-07-12 TYR A:49 R:48 27.0 0.117 -85.0 164.9 27.0 0.117 0.0 HEC
HOH
2.709
2.695
OH
O
O1A
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p99999-f1 1 P99999 100.0 1e-74 TYR A:49 A:49 31.0 0.135 -90.3 156.3