Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr7 | 39736350 | . | T | A | CCDS5460.1:NM_005402.3:c.390gaT>gaA_NP_005393.2:p.130D>E | Homo sapiens RAS like proto-oncogene A (RALA), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
2bov | 1 | P11233 | 100.0 | 6e-153 |
X-RAY |
2005-04-15 | ASP | A:130 | A:130 | 53.0 | 0.353 | T | -85.4 | -8.1 | 53.0 | 0.353 | 0.0 |
GDP HOH |
2.731 3.549 |
OD1 O |
N1 O |
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6p0i | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 52.0 | 0.347 | T | -79.2 | -2.9 | 52.0 | 0.347 | 0.0 |
GDP HOH |
1.741 2.505 |
OD1 HA |
HN1 O |
||
6p0j | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 52.0 | 0.347 | T | -78.3 | -3.2 | 52.0 | 0.347 | 0.0 |
GDP HOH |
1.768 2.561 |
OD1 HA |
HN1 O |
||
6p0k | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 54.0 | 0.36 | T | -79.0 | -1.0 | 54.0 | 0.36 | 0.0 |
GDP HOH |
1.815 2.519 |
OD1 HA |
HN1 O |
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6p0l | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 54.0 | 0.36 | T | -79.3 | -2.0 | 54.0 | 0.36 | 0.0 |
GDP HOH |
1.806 2.718 |
OD1 OD2 |
HN1 O |
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6p0m | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 54.0 | 0.36 | T | -80.9 | -1.6 | 54.0 | 0.36 | 0.0 |
GDP HOH |
1.785 2.496 |
OD1 HA |
HN1 O |
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6p0n | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 56.0 | 0.373 | T | -80.7 | -1.5 | 56.0 | 0.373 | 0.0 |
CL GDP HOH |
7.148 1.839 2.497 |
OD2 OD1 HA |
CL HN1 O |
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6p0o | 1 | P11233 | 100.0 | 8e-132 |
X-RAY |
2020-03-04 | ASP | A:130 | B:130 | 53.0 | 0.353 | T | -78.6 | -1.5 | 53.0 | 0.353 | 0.0 |
GDP HOH |
1.834 2.577 |
OD1 HA |
HN1 O |
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1uad | 1 | P11233 | 100.0 | 3e-128 |
X-RAY |
2003-07-15 | ASP | A:122 | A:130 | 62.0 | 0.413 | T | -72.9 | -12.1 | 62.0 | 0.413 | 0.0 |
GNP HOH |
2.672 2.589 |
OD1 OD2 |
N1 O |
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ASP | B:122 | B:130 | 60.0 | 0.4 | G | -70.8 | -12.1 | NA | NA | NA | |||||||||||||
2a78 | 1 | P11233 | 100.0 | 5e-128 |
X-RAY |
2005-10-11 | ASP | A:134 | A:130 | 54.0 | 0.36 | G | -69.9 | -15.8 | 54.0 | 0.36 | 0.0 |
GDP HOH |
2.710 2.706 |
OD1 OD2 |
N1 O |
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2a9k | 1 | P11233 | 100.0 | 5e-128 |
X-RAY |
2005-10-11 | ASP | A:134 | A:130 | 58.0 | 0.387 | G | -69.8 | -13.9 | 58.0 | 0.387 | 0.0 |
GDP HOH |
2.770 2.606 |
OD1 OD2 |
N1 O |
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1zc3 | 1 | P11233 | 99.43 | 4e-127 |
X-RAY |
2005-06-14 | ASP | A:122 | A:130 | 58.0 | 0.387 | G | -72.9 | -16.9 | 58.0 | 0.387 | 0.0 |
GNP HOH |
2.781 2.686 |
OD2 OD1 |
N1 O |
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ASP | C:122 | C:130 | 57.0 | 0.38 | T | -76.6 | -16.1 | NA | NA | NA | |||||||||||||
1zc4 | 1 | P11233 | 99.43 | 4e-127 |
X-RAY |
2005-06-14 | ASP | A:122 | A:130 | 50.0 | 0.333 | G | -75.7 | -2.9 | 50.0 | 0.333 | 0.0 |
GNP HOH |
2.776 5.939 |
OD2 N |
N1 O |
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ASP | C:122 | C:130 | 55.0 | 0.367 | T | -76.4 | -20.1 | NA | NA | NA | |||||||||||||
1u8y | 1 | P63320 | 99.4 | 3e-122 |
X-RAY |
2004-11-23 | ASP | A:120 | A:130 | 52.0 | 0.347 | G | -76.2 | -13.0 | 52.0 | 0.347 | 0.0 |
MG GNP HOH |
5.995 2.752 2.801 |
N OD1 OD2 |
MG N1 O |
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ASP | B:120 | B:130 | 55.0 | 0.367 | G | -74.5 | -8.4 | NA | NA | NA | |||||||||||||
1u8z | 1 | P63320 | 99.4 | 3e-122 |
X-RAY |
2004-11-23 | ASP | A:120 | A:130 | 58.0 | 0.387 | G | -67.8 | -20.2 | 58.0 | 0.387 | 0.0 |
GDP HOH |
2.763 2.707 |
OD1 OD2 |
N1 O |
||
ASP | B:120 | B:130 | 57.0 | 0.38 | T | -76.3 | -16.4 | NA | NA | NA | |||||||||||||
1u90 | 1 | P63320 | 99.4 | 3e-122 |
X-RAY |
2004-11-23 | ASP | A:120 | A:130 | 58.0 | 0.387 | G | -79.8 | -14.3 | 58.0 | 0.387 | 0.0 |
GDP HOH |
2.643 3.247 |
OD1 O |
N1 O |
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ASP | B:120 | B:130 | 55.0 | 0.367 | G | -75.2 | -17.2 | NA | NA | NA | |||||||||||||
6zqt | 1 | P11234 | 84.86 | 4e-114 |
X-RAY |
2020-11-25 | ASP | A:131 | A:131 | 59.0 | 0.393 | G | -71.2 | -16.8 | 59.0 | 0.393 | 0.0 |
GNP HOH |
2.867 2.571 |
OD1 OD2 |
N1 O |
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ASP | C:131 | B:131 | 49.0 | 0.327 | G | -74.5 | -8.1 | NA | NA | NA | |||||||||||||
6zrn | 1 | P11234 | 84.86 | 4e-114 |
X-RAY |
2020-11-25 | ASP | A:131 | A:131 | 46.0 | 0.307 | G | -74.7 | -11.8 | 46.0 | 0.307 | 0.0 |
GNP HOH |
2.789 2.636 |
OD1 OD2 |
N1 O |
||
ASP | B:131 | B:131 | 59.0 | 0.393 | G | -70.5 | -13.5 | NA | NA | NA | |||||||||||||
2kwi | 1 | P11234 | 84.83 | 9e-110 |
NMR |
2010-09-01 | ASP | A:124 | A:131 | 57.0 | 0.38 | T | -103.6 | -1.5 | 57.0 | 0.38 | 0.0 |
GNP |
2.466 |
OD1 |
HN1 |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p11233-f1 | 1 | P11233 | 100.0 | 3e-153 | ASP | A:130 | A:130 | 53.0 | 0.353 | T | -69.9 | -16.4 | |
af-p11234-f1 | 1 | P11234 | 81.16 | 6e-117 | ASP | A:131 | A:131 | 60.0 | 0.4 | T | -73.0 | -13.9 |