Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 44875220 . T A CCDS5495.1:NM_138635.3:c.233aAa>aTa_NP_619541.1:p.78K>I Homo sapiens H2A histone family member V (H2AFV), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3waa 3 Q71UI9 100.0 1e-87 X-RAY
 2013-12-18 LYS C:81 C:77 194.0 0.97 T 58.7 40.5 194.0 0.97 0.0 DC
DC
DA
DC
DC
DG
DC
DA
DG
 7.737
4.548
2.657
8.336
9.917
7.158
4.699
8.742
9.871
 NZ
NZ
NZ
NZ
O
O
O
O
O
 O3'
O3'
OP2
OP2
N4
O3'
OP2
OP2
O6
LYS G:81 G:77 189.0 0.945 T 63.5 57.8 189.0 0.945 0.0 DT
DG
DC
DA
DC
DA
DC
DC
DT
 7.595
5.168
8.370
9.642
8.264
6.176
4.939
9.135
9.954
 O
O
O
O
NZ
NZ
NZ
NZ
O
 O3'
OP2
OP2
N6
O3'
C3'
OP2
OP2
O4
1f66 4 P17317 98.43 4e-86 X-RAY
 2000-11-27 LYS E:78 C:877 201.0 1.0 T 40.6 60.3 201.0 1.0 0.0 DC
DC
DA
DC
DC
DG
DC
DA
DG
MN
HOH
 9.936
6.593
4.523
7.407
8.728
7.605
5.128
8.323
9.869
9.418
3.718
 NZ
NZ
CE
CD
O
O
O
O
O
O
CE
 O3'
O3'
OP2
OP2
N4
O3'
OP2
OP2
O6
MN
O
LYS I:78 G:1077 202.0 1.0 T 53.0 58.5 202.0 1.0 0.0 DG
DC
DA
DG
DC
DA
DC
MN
HOH
 7.489
5.032
8.172
9.743
9.204
6.882
9.450
9.579
4.224
 O
O
O
O
NZ
NZ
O
O
CD
 O3'
OP2
OP2
O6
C3'
OP2
N4
MN
O
7m1x 5 P0C0S6 98.43 4e-86 EM
 2021-09-29 LYS E:78 C:877 171.0 0.855 T 59.8 45.4 171.0 0.855 0.0 DA
DT
DA
DA
DG
DA
 8.632
6.909
8.104
7.049
4.667
7.663
 CE
CE
CD
O
O
O
 C3'
OP2
OP2
O3'
OP2
OP2
LYS I:78 G:1077 162.0 0.81 T 59.1 57.2 162.0 0.81 0.0 DG
DC
DA
 7.054
4.997
8.178
 O
O
O
 O3'
OP1
OP1
3wa9 3 P0C0S5 98.43 5e-86 X-RAY
 2013-12-18 LYS C:81 C:77 193.0 0.965 T 49.9 36.7 193.0 0.965 0.0 DC
DC
DA
DC
DC
DG
DC
DA
 9.625
6.468
4.649
8.167
9.997
7.021
4.583
8.776
 NZ
NZ
CD
CD
O
O
O
O
 O3'
O3'
OP2
OP2
N4
O3'
OP2
OP2
LYS G:81 G:77 199.0 0.995 T 58.1 47.7 199.0 0.995 0.0 DT
DG
DC
DA
DC
DA
DC
DC
 7.305
4.845
7.819
9.783
8.078
6.047
5.654
9.430
 O
O
O
O
NZ
NZ
CE
CD
 O3'
OP2
OP2
N6
O3'
OP2
OP2
OP2
5b31 5 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 LYS G:81 G:77 174.0 0.87 T 47.7 75.0 174.0 0.87 0.0 DT
DG
DC
DA
DC
DT
MN
HOH
 7.491
5.038
8.192
9.915
9.025
9.956
9.589
7.445
 O
O
O
O
CG
O
O
C
 O3'
OP2
OP2
N6
OP2
O4
MN
O
5b32 5 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 LYS G:81 G:77 197.0 0.985 T 56.4 42.7 197.0 0.985 0.0 DT
DG
DC
DC
DA
DC
DC
DT
 7.576
5.106
8.985
9.799
6.332
4.711
6.355
9.686
 O
O
O
CD
CE
NZ
NZ
O
 O3'
OP2
OP2
O3'
C3'
OP2
OP2
O4
5b33 3 P0C0S5 98.43 5e-86 X-RAY
 2016-08-03 LYS C:81 C:77 195.0 0.975 T 35.9 50.9 195.0 0.975 0.0 DC
DC
DA
DC
DC
DG
DC
DA
DG
 7.970
5.241
3.538
9.290
9.808
7.249
4.759
8.941
9.457
 NZ
NZ
NZ
CD
O
O
O
O
O
 O3'
O3'
OP2
OP2
N4
O3'
OP2
OP2
O6
LYS G:81 G:77 198.0 0.99 T 43.3 43.1 198.0 0.99 0.0 DT
DG
DC
DA
DC
DA
DC
DC
DT
 7.307
4.852
8.561
9.644
8.394
6.068
4.599
9.036
9.939
 O
O
O
O
NZ
NZ
NZ
NZ
O
 O3'
OP2
OP2
N6
O3'
C3'
OP2
OP2
O4
6jou 3 P0C0S5 97.64 4e-85 X-RAY
 2020-03-25 LYS C:81 C:77 188.0 0.94 T 51.8 50.8 188.0 0.94 0.0 DC
DC
DA
DC
DC
DG
DC
DA
DG
MN
HOH
 8.612
6.668
5.249
9.189
9.490
7.207
4.722
8.480
9.768
9.685
6.683
 NZ
NZ
CE
CE
O
O
O
O
O
O
C
 O3'
OP1
OP2
OP2
N4
O3'
OP2
OP2
O6
MN
O
LYS G:81 G:77 164.0 0.82 T 50.6 51.6 164.0 0.82 0.0 DT
DG
DC
DA
DC
DC
HOH
 7.650
5.126
9.009
8.371
6.519
9.804
7.244
 O
O
O
CD
CD
CB
C
 O3'
OP2
OP2
C5'
OP2
OP2
O
5z30 3 P0C0S5 97.64 8e-85 X-RAY
 2018-07-18 LYS C:81 C:77 193.0 0.965 T 62.1 48.2 193.0 0.965 0.0 DC
DC
DA
DC
DC
DG
DC
DA
DG
MN
 9.038
6.126
4.010
8.550
9.600
7.188
4.813
8.054
9.710
9.604
 CE
NZ
NZ
NZ
O
O
O
O
O
O
 O3'
O3'
OP2
OP2
N4
C3'
OP2
OP2
O6
MN
LYS G:81 G:77 201.0 1.0 T 61.0 44.5 201.0 1.0 0.0 DT
DG
DC
DA
DC
DC
MN
 7.657
5.485
9.649
7.668
5.755
9.994
7.959
 O
O
O
CG
CE
CB
O
 O3'
OP2
C5
C5'
OP2
OP2
MN
4cay 1 P0C0S5 98.18 2e-74 X-RAY
 2014-01-22 LYS A:61 A:77 167.0 0.835 T 57.5 39.0 167.0 0.835 0.0 HOH
 2.750
 O
 O
5fug 1 P0C0S5 99.08 4e-74 X-RAY
 2016-03-09 LYS A:60 A:77 164.0 0.82 -80.8 133.4 NA NA NA
LYS D:60 D:77 159.0 0.795 -116.2 109.0 NA NA NA
LYS G:60 G:77 178.0 0.89 -101.1 98.5 163.0 0.815 0.075 H:P06899:0.075
LYS J:60 J:77 148.0 0.74 -119.5 137.5 NA NA NA
6m4d 3 Q71UI9 100.0 8e-73 EM
 2020-09-23 LYS C:78 C:77 167.0 0.835 T 58.6 46.5 167.0 0.835 0.0 DA
DG
 6.640
4.970
 O
O
 O3'
OP1
LYS G:78 G:77 170.0 0.85 T 58.6 46.6 170.0 0.85 0.0 DC
 8.593
 O
 OP2
4nft 1 Q16778,P0C0S5 98.99 1e-65 X-RAY
 2014-04-09 LYS A:160 A:157 183.0 0.915 T 65.0 9.4 183.0 0.915 0.0 HOH
 8.645
 C
 O
LYS B:160 B:157 183.0 0.915 T 60.7 7.7 NA NA NA
LYS C:160 C:157 183.0 0.915 T 64.1 46.1 NA NA NA
LYS D:160 D:157 184.0 0.92 T 63.2 45.8 NA NA NA
5chl 2 P0C0S5 92.23 6e-63 X-RAY
 2016-03-09 LYS B:151 B:151 149.0 0.745 -72.1 130.4 149.0 0.745 0.0 HOH
 3.093
 NZ
 O
6k0c 1 Q27894,Q27511 91.0 2e-60 X-RAY
 2019-10-09 LYS A:159 D:186 89.0 NA T 59.9 40.0 89.0 NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q71ui9-f1 1 Q71UI9 100.0 4e-88 LYS A:78 A:78 197.0 0.985 T 56.0 33.8
af-p0c0s5-f1 1 P0C0S5 98.43 2e-86 LYS A:78 A:78 196.0 0.98 T 56.6 34.5