Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99747131 . C A CCDS34702.1:NM_001008395.2:c.13Ctg>Atg_NP_001008396.1:p.5L>M Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 LEU D:5 D:5 48.0 0.282 H -115.5 -25.7 37.0 0.218 0.064 E:Q6IAA8:0.065
 HOH
 3.421
 CD2
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 LEU D:5 D:5 113.0 0.665 -61.8 -37.7 99.0 0.582 0.083 E:Q6IAA8:0.082
 HOH
 3.891
 CA
 O
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 LEU N:5 I:5 61.0 0.359 H -66.3 -40.7 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 LEU D:5 D:5 57.0 0.335 H -60.0 -57.9 57.0 0.335 0.0 HOH
 7.087
 O
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 LEU D:5 D:5 78.0 0.459 H -58.3 -38.3 74.0 0.435 0.024 E:Q6IAA8:0.024
 HOH
 2.720
 O
 O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 LEU D:5 D:5 33.0 0.194 G -86.4 -15.3 25.0 0.147 0.047 E:Q6IAA8:0.047
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 LEU D:5 D:5 56.0 0.329 H -60.0 -57.9 56.0 0.329 0.0
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 LEU E:5 D:5 82.0 0.482 T -86.6 5.8 73.0 0.429 0.053 F:Q6IAA8:0.053
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 LEU D:5 D:5 34.0 NA H -65.2 -40.4 34.0 NA NA
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 LEU D:5 D:5 28.0 NA H -65.5 -39.0 28.0 NA NA
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 LEU D:7 D:5 22.0 0.129 H -77.1 -18.1 14.0 0.082 0.047 A:Q6IAA8:0.047
 HOH
 7.592
 C
 O
LEU I:7 I:5 103.0 NA T -97.4 27.8 NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 LEU D:7 D:5 30.0 0.176 H -73.6 -45.9 22.0 0.129 0.047 A:Q6IAA8:0.047
 SO4
 7.899
 O
 O4
LEU I:7 I:5 37.0 0.218 H -70.6 -33.8 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 LEU B:7 NA:NA DO NA DO DO DO NA NA NA
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 LEU B:9 B:5 143.0 0.841 S -51.9 -40.6 143.0 0.841 0.0
LEU D:9 D:5 173.0 1.0 76.9 -2.2 NA NA NA
LEU F:9 F:5 150.0 0.882 T -36.8 -46.8 NA NA NA
LEU H:9 H:5 172.0 1.0 -78.2 96.9 NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 LEU G:6 G:5 141.0 NA 360.0 141.7 135.0 NA NA D:Q6IAA8:NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 LEU I:4 D:5 40.0 0.235 H -58.4 -43.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 LEU A:5 A:5 48.0 0.282 T -68.9 -36.2