Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99747146 . G A CCDS34702.1:NM_001008395.2:c.28Gag>Aag_NP_001008396.1:p.10E>K Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 GLU D:10 D:10 76.0 0.4 H -67.5 -34.5 76.0 0.4 0.0 HOH
 2.724
 O
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 GLU D:10 D:10 98.0 0.516 G -62.4 -36.8 98.0 0.516 0.0 HOH
 4.500
 OE2
 O
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 GLU N:10 I:10 109.0 0.574 H -56.5 -29.8 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 GLU D:10 D:10 96.0 0.505 H -55.9 -36.4 96.0 0.505 0.0 HOH
 2.307
 OE1
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 GLU D:10 D:10 92.0 0.484 H -60.6 -32.7 92.0 0.484 0.0 HOH
 3.408
 OE2
 O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 GLU D:10 D:10 93.0 0.489 G -70.3 -18.8 93.0 0.489 0.0
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 GLU D:10 D:10 96.0 0.505 H -55.9 -36.3 96.0 0.505 0.0
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 GLU E:10 D:10 115.0 0.605 S -122.7 22.3 115.0 0.605 0.0
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 GLU D:10 D:10 58.0 NA H -71.2 -24.0 58.0 NA NA
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 GLU D:10 D:10 36.0 NA H -73.0 -27.1 36.0 NA NA
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 GLU D:12 D:10 84.0 0.442 H -71.5 -28.9 84.0 0.442 0.0 HOH
 6.299
 OE1
 O
GLU I:12 I:10 88.0 NA H -81.5 -15.6 NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 GLU D:12 D:10 98.0 0.516 H -75.4 -35.8 98.0 0.516 0.0
GLU I:12 I:10 110.0 0.579 T -76.5 -24.5 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 GLU B:12 NA:NA DO NA DO DO DO NA NA NA
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 GLU B:14 B:10 160.0 0.842 -50.5 123.0 160.0 0.842 0.0
GLU D:14 D:10 175.0 0.921 -99.7 143.8 NA NA NA
GLU F:14 F:10 153.0 0.805 -63.1 105.8 NA NA NA
GLU H:14 H:10 145.0 0.763 -87.5 147.7 NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 GLU G:11 G:10 74.0 NA T -61.5 -10.5 74.0 NA NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 GLU I:9 D:10 97.0 0.511 H -61.8 -34.5 NA NA NA
5yk3 4 Q0VGL1 98.85 2e-58 X-RAY
 2019-01-23 GLU D:6 n:10 118.0 0.621 H -69.8 -16.8 118.0 0.621 0.0
5yk5 1 Q0VGL1 100.0 8e-57 X-RAY
 2018-12-12 GLU A:2 A:10 91.0 NA -58.1 143.0 91.0 NA NA HOH
 8.897
 CB
 O
5yk5 3 Q0VGL1 98.8 3e-55 X-RAY
 2018-12-12 ALA C:2 C:10 93.0 0.809 -61.9 148.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 GLU A:10 A:10 77.0 0.405 H -65.0 -22.6