Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr7 | 99751099 | . | G | A | CCDS34702.1:NM_001008395.2:c.161cGg>cAg_NP_001008396.1:p.54R>Q | Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5x6u | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-06 | ARG | D:54 | D:54 | 63.0 | 0.28 | -171.3 | 143.6 | 33.0 | 0.147 | 0.133 |
E:Q6IAA8:0.076 A:Q9UHA4:0.058 |
HOH |
2.756 |
N |
O |
||
5x6v | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-06 | ARG | D:54 | D:54 | 154.0 | 0.684 | -132.7 | 120.5 | 132.0 | 0.587 | 0.097 |
E:Q6IAA8:0.022 C:O43504:0.076 |
HOH |
3.150 |
N |
O |
||
5yk3 | 11 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2019-01-23 | ARG | N:54 | I:54 | 179.0 | 0.796 | -103.8 | 94.2 | NA | NA | NA | |||||||
6b9x | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-11-08 | ARG | D:54 | D:54 | 104.0 | 0.462 | -71.6 | 139.3 | 69.0 | 0.307 | 0.155 |
A:Q6IAA8:0.093 E:A0A0C4DGV4:0.004 C:Q9UHA4:0.058 |
HOH |
3.083 |
N |
O |
||
6ehp | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-10-04 | ARG | D:54 | D:54 | 113.0 | 0.502 | -86.5 | 147.5 | 75.0 | 0.333 | 0.169 |
A:Q9UHA4:0.058 C:O43504:0.111 |
CL HOH |
7.391 3.606 |
CB O |
CL O |
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6ehr | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-10-04 | ARG | D:54 | D:54 | 101.0 | 0.449 | -125.7 | 141.4 | 80.0 | 0.356 | 0.093 |
E:Q6IAA8:0.031 C:O43504:0.062 |
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6nzd | 4 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2019-11-06 | ARG | D:54 | D:54 | 103.0 | 0.458 | -71.6 | 139.3 | 68.0 | 0.302 | 0.156 |
A:Q6IAA8:0.089 E:A0A0C4DGV4:0.004 C:Q9UHA4:0.058 |
||||||
6ulg | 5 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2019-11-20 | ARG | E:54 | D:54 | 162.0 | 0.72 | -121.0 | 136.3 | 134.0 | 0.596 | 0.124 |
F:Q6IAA8:0.089 D:O43504:0.04 |
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6wj2 | 4 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2020-09-02 | ARG | D:54 | D:54 | 105.0 | 0.467 | -112.6 | 110.4 | 92.0 | 0.409 | 0.058 |
E:A0A0C4DGV4:0.058 |
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6wj3 | 4 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2020-09-02 | ARG | D:54 | D:54 | 118.0 | 0.524 | -121.3 | 115.7 | 103.0 | 0.458 | 0.066 |
A:Q6IAA8:0.004 E:A0A0C4DGV4:0.058 |
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5y39 | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-06 | ARG | D:56 | D:54 | 112.0 | 0.498 | -127.8 | 128.7 | 84.0 | 0.373 | 0.125 |
E:O43504:0.062 A:Q6IAA8:0.058 |
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ARG | I:56 | I:54 | 158.0 | NA | -74.5 | 360.0 | NA | NA | NA | ||||||||||||||
5y3a | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-27 | ARG | D:56 | D:54 | 171.0 | 0.76 | -129.3 | 112.4 | 108.0 | 0.48 | 0.28 |
E:O43504:0.173 C:Q9UHA4:0.142 |
HOH |
7.156 |
N |
O |
||
ARG | I:56 | I:54 | 157.0 | 0.698 | -149.4 | 120.7 | NA | NA | NA | ||||||||||||||
5y38 | 2 | Q0VGL1 | 100.0 | 2e-68 |
X-RAY |
2017-12-06 | ARG | B:56 | B:54 | 107.0 | 0.476 | -111.1 | 121.2 | 96.0 | 0.427 | 0.049 |
A:O43504:0.049 |
SO4 HOH |
7.707 3.858 |
NH2 CA |
O3 O |
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5vok | 2 | Q0VGL1 | 100.0 | 2e-68 |
X-RAY |
2018-05-23 | ARG | B:58 | B:54 | 138.0 | 0.613 | -75.2 | -37.9 | 137.0 | 0.609 | 0.004 |
A:O43504:0.004 |
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ARG | D:58 | D:54 | 173.0 | 0.769 | -54.8 | 152.2 | NA | NA | NA | ||||||||||||||
ARG | F:58 | F:54 | 140.0 | 0.622 | -145.9 | 143.9 | NA | NA | NA | ||||||||||||||
ARG | H:58 | H:54 | 279.0 | 1.0 | -81.0 | 360.0 | NA | NA | NA | ||||||||||||||
6u62 | 7 | Q0VGL1 | 100.0 | 2e-67 |
EM |
2019-10-30 | ARG | G:55 | G:54 | 70.0 | NA | 52.8 | 46.5 | 60.0 | NA | NA |
H:O43504:NA |
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5yk3 | 9 | Q0VGL1 | 98.95 | 5e-65 |
X-RAY |
2019-01-23 | ARG | I:53 | D:54 | 184.0 | 0.818 | G | -28.3 | -53.9 | NA | NA | NA | ||||||
5yk3 | 4 | Q0VGL1 | 98.85 | 2e-58 |
X-RAY |
2019-01-23 | ARG | D:50 | n:54 | 67.0 | NA | T | -73.7 | 163.2 | 8.0 | NA | NA |
A:Q9UHA4:NA C:O43504:NA |
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5yk5 | 1 | Q0VGL1 | 100.0 | 8e-57 |
X-RAY |
2018-12-12 | ARG | A:46 | A:54 | 97.0 | 0.431 | -123.5 | 132.7 | 89.0 | 0.396 | 0.035 |
B:O43504:0.036 |
HOH |
3.443 |
NH2 |
O |
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5yk5 | 3 | Q0VGL1 | 98.8 | 3e-55 |
X-RAY |
2018-12-12 | ARG | C:46 | C:54 | 92.0 | 0.409 | -123.0 | 127.9 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q0vgl1-f1 | 1 | Q0VGL1 | 100.0 | 4e-69 | ARG | A:54 | A:54 | 140.0 | 0.622 | -127.5 | 89.6 |