Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99751099 . G A CCDS34702.1:NM_001008395.2:c.161cGg>cAg_NP_001008396.1:p.54R>Q Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 ARG D:54 D:54 63.0 0.28 -171.3 143.6 33.0 0.147 0.133 E:Q6IAA8:0.076
A:Q9UHA4:0.058
 HOH
 2.756
 N
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 ARG D:54 D:54 154.0 0.684 -132.7 120.5 132.0 0.587 0.097 E:Q6IAA8:0.022
C:O43504:0.076
 HOH
 3.150
 N
 O
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 ARG N:54 I:54 179.0 0.796 -103.8 94.2 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 ARG D:54 D:54 104.0 0.462 -71.6 139.3 69.0 0.307 0.155 A:Q6IAA8:0.093
E:A0A0C4DGV4:0.004
C:Q9UHA4:0.058
 HOH
 3.083
 N
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 ARG D:54 D:54 113.0 0.502 -86.5 147.5 75.0 0.333 0.169 A:Q9UHA4:0.058
C:O43504:0.111
 CL
HOH
 7.391
3.606
 CB
O
 CL
O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 ARG D:54 D:54 101.0 0.449 -125.7 141.4 80.0 0.356 0.093 E:Q6IAA8:0.031
C:O43504:0.062
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 ARG D:54 D:54 103.0 0.458 -71.6 139.3 68.0 0.302 0.156 A:Q6IAA8:0.089
E:A0A0C4DGV4:0.004
C:Q9UHA4:0.058
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 ARG E:54 D:54 162.0 0.72 -121.0 136.3 134.0 0.596 0.124 F:Q6IAA8:0.089
D:O43504:0.04
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 ARG D:54 D:54 105.0 0.467 -112.6 110.4 92.0 0.409 0.058 E:A0A0C4DGV4:0.058
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 ARG D:54 D:54 118.0 0.524 -121.3 115.7 103.0 0.458 0.066 A:Q6IAA8:0.004
E:A0A0C4DGV4:0.058
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 ARG D:56 D:54 112.0 0.498 -127.8 128.7 84.0 0.373 0.125 E:O43504:0.062
A:Q6IAA8:0.058
ARG I:56 I:54 158.0 NA -74.5 360.0 NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 ARG D:56 D:54 171.0 0.76 -129.3 112.4 108.0 0.48 0.28 E:O43504:0.173
C:Q9UHA4:0.142
 HOH
 7.156
 N
 O
ARG I:56 I:54 157.0 0.698 -149.4 120.7 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 ARG B:56 B:54 107.0 0.476 -111.1 121.2 96.0 0.427 0.049 A:O43504:0.049
 SO4
HOH
 7.707
3.858
 NH2
CA
 O3
O
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 ARG B:58 B:54 138.0 0.613 -75.2 -37.9 137.0 0.609 0.004 A:O43504:0.004
ARG D:58 D:54 173.0 0.769 -54.8 152.2 NA NA NA
ARG F:58 F:54 140.0 0.622 -145.9 143.9 NA NA NA
ARG H:58 H:54 279.0 1.0 -81.0 360.0 NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 ARG G:55 G:54 70.0 NA 52.8 46.5 60.0 NA NA H:O43504:NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 ARG I:53 D:54 184.0 0.818 G -28.3 -53.9 NA NA NA
5yk3 4 Q0VGL1 98.85 2e-58 X-RAY
 2019-01-23 ARG D:50 n:54 67.0 NA T -73.7 163.2 8.0 NA NA A:Q9UHA4:NA
C:O43504:NA
5yk5 1 Q0VGL1 100.0 8e-57 X-RAY
 2018-12-12 ARG A:46 A:54 97.0 0.431 -123.5 132.7 89.0 0.396 0.035 B:O43504:0.036
 HOH
 3.443
 NH2
 O
5yk5 3 Q0VGL1 98.8 3e-55 X-RAY
 2018-12-12 ARG C:46 C:54 92.0 0.409 -123.0 127.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 ARG A:54 A:54 140.0 0.622 -127.5 89.6