Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99751108 . G A CCDS34702.1:NM_001008395.2:c.170cGc>cAc_NP_001008396.1:p.57R>H Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 ARG D:57 D:57 189.0 0.84 -118.3 170.3 83.0 0.369 0.471 E:Q6IAA8:0.347
A:Q9UHA4:0.124
 HOH
 2.955
 NH1
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 ARG D:57 NA:NA DO NA DO DO DO NA NA NA
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 ARG N:57 I:57 212.0 0.942 S 68.0 -65.4 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 ARG D:57 D:57 221.0 0.982 T -88.6 7.4 169.0 0.751 0.231 C:Q9UHA4:0.231
 HOH
 3.303
 NH2
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 ARG D:57 D:57 215.0 0.956 -127.2 158.6 94.0 0.418 0.538 A:Q9UHA4:0.08
E:Q6IAA8:0.458
 CL
HOH
 3.688
3.224
 NH1
CA
 CL
O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 ARG D:57 D:57 235.0 1.0 S 58.9 40.0 217.0 0.964 0.036 A:Q9UHA4:0.053
C:O43504:0.04
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 ARG D:57 D:57 216.0 0.96 T -88.6 7.4 166.0 0.738 0.222 C:Q9UHA4:0.222
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 ARG E:57 NA:NA DO NA DO DO DO NA NA NA
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 ARG D:57 D:57 218.0 0.969 S -91.5 27.0 218.0 0.969 0.0
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 ARG D:57 D:57 209.0 0.929 S -94.1 31.3 198.0 0.88 0.049 E:A0A0C4DGV4:0.049
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 ARG D:59 D:57 255.0 1.0 T -85.5 15.0 255.0 1.0 0.0
ARG I:59 NA:NA DO NA DO DO DO NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 ARG D:59 D:57 67.0 NA S -68.2 142.0 67.0 NA NA
ARG I:59 I:57 201.0 0.893 S -78.3 145.6 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 ARG B:59 B:57 243.0 1.0 T -67.2 135.7 243.0 1.0 0.0 HOH
 3.307
 N
 O
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 ARG B:61 B:57 196.0 0.871 S -115.2 -56.8 132.0 0.587 0.284 A:O43504:0.284
ARG D:61 NA:NA DO NA DO DO DO NA NA NA
ARG F:61 F:57 232.0 1.0 S -63.2 3.1 NA NA NA
ARG H:61 NA:NA DO NA DO DO DO NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 ARG G:58 NA:NA DO NA DO DO DO NA NA NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 ARG I:56 D:57 57.0 0.253 -121.5 133.5 NA NA NA
5yk3 4 Q0VGL1 98.85 2e-58 X-RAY
 2019-01-23 ARG D:53 n:57 154.0 0.684 T -69.2 -19.6 125.0 0.556 0.128 A:Q9UHA4:0.089
E:Q6IAA8:0.04
5yk5 1 Q0VGL1 100.0 8e-57 X-RAY
 2018-12-12 ARG A:49 A:57 158.0 0.702 -129.3 109.7 154.0 0.684 0.018 B:O43504:0.018
 HOH
 3.001
 O
 O
5yk5 3 Q0VGL1 98.8 3e-55 X-RAY
 2018-12-12 ARG C:49 C:57 79.0 NA S -121.7 -63.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 ARG A:57 A:57 265.0 1.0 S -62.8 11.9