Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99751110 . G A CCDS34702.1:NM_001008395.2:c.172Ggc>Agc_NP_001008396.1:p.58G>S Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
pdb_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 GLY D:58 D:58 75.0 1.0 S 90.2 -1.0 54.0 0.72 0.28 E:Q6IAA8:0.28
 HOH
 3.217
 N
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 GLY D:58 NA:NA DO NA DO DO DO NA NA NA
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 GLY N:58 I:58 50.0 0.667 S -47.8 120.8 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 GLY D:58 D:58 82.0 1.0 T -87.1 -18.8 82.0 1.0 0.0 HOH
 2.702
 O
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 GLY D:58 D:58 71.0 0.947 S 84.8 1.0 51.0 0.68 0.267 E:Q6IAA8:0.267
 CL
HOH
 3.060
3.414
 N
N
 CL
O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 GLY D:58 D:58 30.0 0.4 -74.0 -29.6 30.0 0.4 0.0
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 GLY D:58 D:58 80.0 1.0 T -87.1 -18.7 80.0 1.0 0.0
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 GLY E:58 NA:NA DO NA DO DO DO NA NA NA
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 GLY D:58 D:58 46.0 0.613 S 110.6 95.3 46.0 0.613 0.0
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 GLY D:58 D:58 58.0 0.773 S 114.6 101.3 58.0 0.773 0.0
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 GLY D:60 D:58 65.0 0.867 T -131.6 18.4 65.0 0.867 0.0
GLY I:60 NA:NA DO NA DO DO DO NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 GLY D:60 D:58 72.0 0.96 S 62.2 76.8 72.0 0.96 0.0
GLY I:60 I:58 75.0 1.0 S 72.6 54.9 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 GLY B:60 B:58 62.0 0.827 T 58.9 41.8 62.0 0.827 0.0 HOH
 6.651
 N
 O
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 GLY B:62 B:58 49.0 0.653 S -101.2 104.4 28.0 0.373 0.28 A:O43504:0.28
GLY D:62 NA:NA DO NA DO DO DO NA NA NA
GLY F:62 F:58 9.0 0.12 -76.4 57.7 NA NA NA
GLY H:62 NA:NA DO NA DO DO DO NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 GLY G:59 NA:NA DO NA DO DO DO NA NA NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 GLY I:57 D:58 88.0 1.0 S -89.3 26.4 NA NA NA
5yk3 4 Q0VGL1 98.85 2e-58 X-RAY
 2019-01-23 GLY D:54 n:58 57.0 0.76 S -41.9 -58.9 57.0 0.76 0.0
5yk5 1 Q0VGL1 100.0 8e-57 X-RAY
 2018-12-12 GLY A:50 A:58 54.0 0.72 T -53.6 -33.6 54.0 0.72 0.0 HOH
 4.869
 N
 O
5yk5 3 Q0VGL1 98.8 3e-55 X-RAY
 2018-12-12 GLY C:50 C:58 30.0 0.4 S -84.5 177.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 GLY A:58 A:58 42.0 0.56 -77.5 147.6