Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr7 99751114 . T A CCDS34702.1:NM_001008395.2:c.176aTg>aAg_NP_001008396.1:p.59M>K Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5x6u 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 MET D:59 D:59 167.0 0.903 S -118.2 -155.2 164.0 0.886 0.017 E:Q6IAA8:0.016
 HOH
 3.966
 CG
 O
5x6v 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 MET D:59 NA:NA DO NA DO DO DO NA NA NA
5yk3 11 Q0VGL1 100.0 1e-68 X-RAY
 2019-01-23 MET N:59 I:59 66.0 0.357 S -70.2 -37.1 NA NA NA
6b9x 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-11-08 MET D:59 D:59 90.0 0.486 S -88.0 151.4 49.0 0.265 0.221 E:A0A0C4DGV4:0.222
 HOH
 3.414
 O
 O
6ehp 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 MET D:59 D:59 172.0 0.93 S -122.7 -156.3 166.0 0.897 0.033 E:Q6IAA8:0.032
 CL
HOH
 4.662
2.903
 N
N
 CL
O
6ehr 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-10-04 MET D:59 D:59 151.0 0.816 63.4 4.9 151.0 0.816 0.0
6nzd 4 Q0VGL1 100.0 1e-68 EM
 2019-11-06 MET D:59 D:59 90.0 0.486 S -88.0 151.4 50.0 0.27 0.216 E:A0A0C4DGV4:0.216
6ulg 5 Q0VGL1 100.0 1e-68 EM
 2019-11-20 MET E:59 NA:NA DO NA DO DO DO NA NA NA
6wj2 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 MET D:59 D:59 107.0 0.578 -147.4 -158.0 107.0 0.578 0.0
6wj3 4 Q0VGL1 100.0 1e-68 EM
 2020-09-02 MET D:59 D:59 78.0 0.422 -157.5 -164.5 78.0 0.422 0.0
5y39 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-06 MET D:61 D:59 93.0 0.503 -110.7 126.6 93.0 0.503 0.0
MET I:61 NA:NA DO NA DO DO DO NA NA NA
5y3a 4 Q0VGL1 100.0 1e-68 X-RAY
 2017-12-27 MET D:61 D:59 71.0 0.384 -127.0 134.7 54.0 0.292 0.092 E:O43504:0.092
MET I:61 I:59 64.0 0.346 -114.9 124.9 NA NA NA
5y38 2 Q0VGL1 100.0 2e-68 X-RAY
 2017-12-06 MET B:61 B:59 89.0 0.481 -106.9 98.9 61.0 0.33 0.151 A:O43504:0.151
 HOH
 3.372
 O
 O
5vok 2 Q0VGL1 100.0 2e-68 X-RAY
 2018-05-23 MET B:63 B:59 98.0 0.53 -94.2 149.2 98.0 0.53 0.0
MET D:63 NA:NA DO NA DO DO DO NA NA NA
MET F:63 F:59 116.0 0.627 -64.8 -43.9 NA NA NA
MET H:63 NA:NA DO NA DO DO DO NA NA NA
6u62 7 Q0VGL1 100.0 2e-67 EM
 2019-10-30 MET G:60 NA:NA DO NA DO DO DO NA NA NA
5yk3 9 Q0VGL1 98.95 5e-65 X-RAY
 2019-01-23 MET I:58 D:59 139.0 0.751 S -75.3 -172.2 NA NA NA
5yk3 4 Q0VGL1 98.85 2e-58 X-RAY
 2019-01-23 MET D:55 n:59 156.0 0.843 S -98.3 -48.0 156.0 0.843 0.0
5yk5 1 Q0VGL1 100.0 8e-57 X-RAY
 2018-12-12 MET A:51 A:59 185.0 1.0 T -98.7 34.3 185.0 1.0 0.0 HOH
 4.489
 O
 O
5yk5 3 Q0VGL1 98.8 3e-55 X-RAY
 2018-12-12 MET C:51 C:59 149.0 0.805 S -78.9 21.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q0vgl1-f1 1 Q0VGL1 100.0 4e-69 MET A:59 A:59 179.0 0.968 S -81.5 -5.6