Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr7 | 99751114 | . | T | A | CCDS34702.1:NM_001008395.2:c.176aTg>aAg_NP_001008396.1:p.59M>K | Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 (LAMTOR4), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
5x6u | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-06 | MET | D:59 | D:59 | 167.0 | 0.903 | S | -118.2 | -155.2 | 164.0 | 0.886 | 0.017 |
E:Q6IAA8:0.016 |
HOH |
3.966 |
CG |
O |
|
5x6v | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-06 | MET | D:59 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
5yk3 | 11 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2019-01-23 | MET | N:59 | I:59 | 66.0 | 0.357 | S | -70.2 | -37.1 | NA | NA | NA | ||||||
6b9x | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-11-08 | MET | D:59 | D:59 | 90.0 | 0.486 | S | -88.0 | 151.4 | 49.0 | 0.265 | 0.221 |
E:A0A0C4DGV4:0.222 |
HOH |
3.414 |
O |
O |
|
6ehp | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-10-04 | MET | D:59 | D:59 | 172.0 | 0.93 | S | -122.7 | -156.3 | 166.0 | 0.897 | 0.033 |
E:Q6IAA8:0.032 |
CL HOH |
4.662 2.903 |
N N |
CL O |
|
6ehr | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-10-04 | MET | D:59 | D:59 | 151.0 | 0.816 | 63.4 | 4.9 | 151.0 | 0.816 | 0.0 | |||||||
6nzd | 4 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2019-11-06 | MET | D:59 | D:59 | 90.0 | 0.486 | S | -88.0 | 151.4 | 50.0 | 0.27 | 0.216 |
E:A0A0C4DGV4:0.216 |
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6ulg | 5 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2019-11-20 | MET | E:59 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
6wj2 | 4 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2020-09-02 | MET | D:59 | D:59 | 107.0 | 0.578 | -147.4 | -158.0 | 107.0 | 0.578 | 0.0 | |||||||
6wj3 | 4 | Q0VGL1 | 100.0 | 1e-68 |
EM |
2020-09-02 | MET | D:59 | D:59 | 78.0 | 0.422 | -157.5 | -164.5 | 78.0 | 0.422 | 0.0 | |||||||
5y39 | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-06 | MET | D:61 | D:59 | 93.0 | 0.503 | -110.7 | 126.6 | 93.0 | 0.503 | 0.0 | |||||||
MET | I:61 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
5y3a | 4 | Q0VGL1 | 100.0 | 1e-68 |
X-RAY |
2017-12-27 | MET | D:61 | D:59 | 71.0 | 0.384 | -127.0 | 134.7 | 54.0 | 0.292 | 0.092 |
E:O43504:0.092 |
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MET | I:61 | I:59 | 64.0 | 0.346 | -114.9 | 124.9 | NA | NA | NA | ||||||||||||||
5y38 | 2 | Q0VGL1 | 100.0 | 2e-68 |
X-RAY |
2017-12-06 | MET | B:61 | B:59 | 89.0 | 0.481 | -106.9 | 98.9 | 61.0 | 0.33 | 0.151 |
A:O43504:0.151 |
HOH |
3.372 |
O |
O |
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5vok | 2 | Q0VGL1 | 100.0 | 2e-68 |
X-RAY |
2018-05-23 | MET | B:63 | B:59 | 98.0 | 0.53 | -94.2 | 149.2 | 98.0 | 0.53 | 0.0 | |||||||
MET | D:63 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
MET | F:63 | F:59 | 116.0 | 0.627 | -64.8 | -43.9 | NA | NA | NA | ||||||||||||||
MET | H:63 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | |||||||||||||
6u62 | 7 | Q0VGL1 | 100.0 | 2e-67 |
EM |
2019-10-30 | MET | G:60 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
5yk3 | 9 | Q0VGL1 | 98.95 | 5e-65 |
X-RAY |
2019-01-23 | MET | I:58 | D:59 | 139.0 | 0.751 | S | -75.3 | -172.2 | NA | NA | NA | ||||||
5yk3 | 4 | Q0VGL1 | 98.85 | 2e-58 |
X-RAY |
2019-01-23 | MET | D:55 | n:59 | 156.0 | 0.843 | S | -98.3 | -48.0 | 156.0 | 0.843 | 0.0 | ||||||
5yk5 | 1 | Q0VGL1 | 100.0 | 8e-57 |
X-RAY |
2018-12-12 | MET | A:51 | A:59 | 185.0 | 1.0 | T | -98.7 | 34.3 | 185.0 | 1.0 | 0.0 |
HOH |
4.489 |
O |
O |
||
5yk5 | 3 | Q0VGL1 | 98.8 | 3e-55 |
X-RAY |
2018-12-12 | MET | C:51 | C:59 | 149.0 | 0.805 | S | -78.9 | 21.5 | NA | NA | NA |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-q0vgl1-f1 | 1 | Q0VGL1 | 100.0 | 4e-69 | MET | A:59 | A:59 | 179.0 | 0.968 | S | -81.5 | -5.6 |