Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 22887139 . G A CCDS6035.1:NM_003842.4:c.460Cgg>Tgg_NP_003833.4:p.154R>W Homo sapiens TNF receptor superfamily member 10b (TNFRSF10B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3x3f 3 O14763 97.74 2e-94 X-RAY
 2015-12-23 ARG C:101 NA:NA DO NA DO DO DO NA NA NA
1za3 3 O14763 100.0 2e-93 X-RAY
 2005-06-14 ARG C:105 R:101 124.0 0.551 E -134.5 137.1 NA NA NA
ARG F:105 S:101 122.0 0.542 E -135.5 132.9 122.0 0.542 0.0
1d0g 1 O14763 100.0 2e-93 X-RAY
 1999-10-22 ARG A:101 R:101 115.0 0.511 E -112.3 151.7 21.0 0.093 0.418 D:P50591:0.138
F:P50591:0.391
 HOH
 2.841
 NH1
 O
ARG B:101 S:101 111.0 0.493 E -108.1 144.6 17.0 0.076 0.417 E:P50591:0.138
D:P50591:0.396
 HOH
 2.875
 NH1
 O
ARG C:101 T:101 113.0 0.502 E -107.9 151.0 18.0 0.08 0.422 E:P50591:0.4
F:P50591:0.129
 HOH
 3.098
 CB
 O
1du3 1 O14763 100.0 2e-93 X-RAY
 2000-09-27 ARG A:101 A:101 113.0 0.502 E -118.5 152.2 17.0 0.076 0.426 D:P50591:0.142
F:P50591:0.391
 HOH
 2.674
 NH2
 O
ARG B:101 B:101 112.0 0.498 E -106.0 165.1 18.0 0.08 0.418 E:P50591:0.156
D:P50591:0.387
 HOH
 6.745
 O
 O
ARG C:101 C:101 127.0 0.564 B -74.5 132.8 23.0 0.102 0.462 E:P50591:0.427
F:P50591:0.147
 HOH
 5.223
 NH1
 O
ARG G:101 G:101 108.0 0.48 E -116.0 144.1 NA NA NA
ARG H:101 H:101 117.0 0.52 E -73.4 138.6 NA NA NA
ARG I:101 I:101 123.0 0.547 B -94.6 148.7 NA NA NA
2h9g 3 O14763 100.0 2e-93 X-RAY
 2006-08-08 ARG C:101 R:101 90.0 0.4 E -113.8 165.9 90.0 0.4 0.0
ARG F:101 NA:NA DO NA DO DO DO NA NA NA
6t3j 5 O14763 100.0 2e-91 X-RAY
 2020-09-16 ARG E:97 E:154 146.0 0.649 E -92.4 152.1 89.0 0.396 0.253 A:None:0.253
ARG J:97 J:154 151.0 0.671 E -92.6 150.5 NA NA NA
4i9x 2 O14763 100.0 2e-91 X-RAY
 2013-04-03 ARG C:97 C:154 135.0 0.6 E -116.9 143.3 121.0 0.538 0.062 B:Q6RJQ3:0.062
 HOH
 4.218
 CZ
 O
ARG D:97 D:154 135.0 0.6 E -129.4 136.7 122.0 0.542 0.058 A:Q6RJQ3:0.058
 HOH
 3.810
 CG
 O
4n90 1 O14763 100.0 1e-90 X-RAY
 2014-09-03 ARG A:98 R:101 103.0 0.458 E -124.5 146.4 NA NA NA
ARG B:98 S:101 118.0 0.524 E -106.4 141.8 NA NA NA
ARG C:98 T:101 104.0 0.462 E -106.7 142.1 69.0 0.307 0.155 F:P50591:0.156
1d4v 2 2338420 100.0 1e-82 X-RAY
 1999-11-01 ARG B:86 A:154 132.0 0.587 E -105.8 139.2 27.0 0.12 0.467 A:P50591:0.196
A:P50591:0.391
 HOH
 6.015
 N
 O
4od2 3 O14763 100.0 2e-78 X-RAY
 2014-02-05 ARG C:82 S:101 160.0 0.711 E -104.2 149.4 160.0 0.711 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o14763-f1 1 O14763 100.0 0.0 ARG A:154 A:154 114.0 0.507 E -84.7 146.1