Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 22887153 . G A CCDS6035.1:NM_003842.4:c.446tCt>tTt_NP_003833.4:p.149S>F Homo sapiens TNF receptor superfamily member 10b (TNFRSF10B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3x3f 3 O14763 97.74 2e-94 X-RAY
 2015-12-23 SER C:96 NA:NA DO NA DO DO DO NA NA NA
1za3 3 O14763 100.0 2e-93 X-RAY
 2005-06-14 SER C:100 R:96 17.0 0.148 E -138.6 57.9 NA NA NA
SER F:100 S:96 16.0 0.139 E -138.6 58.0 16.0 0.139 0.0
1d0g 1 O14763 100.0 2e-93 X-RAY
 1999-10-22 SER A:96 R:96 18.0 0.157 E -141.5 63.8 3.0 0.026 0.131 D:P50591:0.026
F:P50591:0.13
 HOH
 4.413
 CB
 O
SER B:96 S:96 20.0 0.174 E -138.6 57.9 3.0 0.026 0.148 E:P50591:0.043
D:P50591:0.148
 HOH
 4.471
 N
 O
SER C:96 T:96 18.0 0.157 -135.4 56.2 3.0 0.026 0.131 E:P50591:0.13
F:P50591:0.035
 HOH
 4.238
 N
 O
1du3 1 O14763 100.0 2e-93 X-RAY
 2000-09-27 SER A:96 A:96 22.0 0.191 E -130.6 60.7 2.0 0.017 0.174 D:P50591:0.026
F:P50591:0.174
 HOH
 4.046
 N
 O
SER B:96 B:96 19.0 0.165 -179.1 55.6 1.0 0.009 0.156 E:P50591:0.026
D:P50591:0.157
 HOH
 6.944
 O
 O
SER C:96 C:96 23.0 0.2 -144.8 61.2 2.0 0.017 0.183 E:P50591:0.183
F:P50591:0.052
 HOH
 4.223
 CB
 O
SER G:96 G:96 15.0 0.13 -151.0 62.6 NA NA NA
SER H:96 H:96 20.0 0.174 E -155.4 53.5 NA NA NA
SER I:96 I:96 22.0 0.191 -129.5 63.7 NA NA NA
2h9g 3 O14763 100.0 2e-93 X-RAY
 2006-08-08 SER C:96 R:96 24.0 0.209 -68.3 120.5 21.0 0.183 0.026 A:None:0.026
SER F:96 NA:NA DO NA DO DO DO NA NA NA
6t3j 5 O14763 100.0 2e-91 X-RAY
 2020-09-16 SER E:92 E:149 48.0 0.417 S -76.8 -172.0 48.0 0.417 0.0
SER J:92 J:149 53.0 0.461 S -76.3 -172.7 NA NA NA
4i9x 2 O14763 100.0 2e-91 X-RAY
 2013-04-03 SER C:92 C:149 90.0 0.783 T -54.3 141.6 30.0 0.261 0.522 B:Q6RJQ3:0.522
 CA
HOH
 9.715
2.830
 N
OG
 CA
O
SER D:92 D:149 97.0 0.843 T -46.3 135.5 40.0 0.348 0.495 A:Q6RJQ3:0.496
 HOH
 3.735
 N
 O
4n90 1 O14763 100.0 1e-90 X-RAY
 2014-09-03 SER A:93 R:96 12.0 0.104 -154.3 36.6 NA NA NA
SER B:93 S:96 14.0 0.122 -159.4 53.3 NA NA NA
SER C:93 T:96 21.0 0.183 E -140.3 70.1 17.0 0.148 0.035 F:P50591:0.035
1d4v 2 2338420 100.0 1e-82 X-RAY
 1999-11-01 SER B:81 A:149 26.0 0.226 -134.7 51.5 6.0 0.052 0.174 A:P50591:0.026
A:P50591:0.174
 HOH
 3.660
 OG
 O
4od2 3 O14763 100.0 2e-78 X-RAY
 2014-02-05 SER C:77 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o14763-f1 1 O14763 100.0 0.0 SER A:149 A:149 43.0 0.374 E -142.2 65.5