Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 22888272 . C A CCDS6035.1:NM_003842.4:c.364Ggt>Tgt_NP_003833.4:p.122G>C Homo sapiens TNF receptor superfamily member 10b (TNFRSF10B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3x3f 3 O14763 97.74 2e-94 X-RAY
 2015-12-23 GLY C:69 A:122 40.0 0.533 T -80.1 7.6 40.0 0.533 0.0 HOH
 8.351
 N
 O
1za3 3 O14763 100.0 2e-93 X-RAY
 2005-06-14 GLY C:73 R:69 21.0 0.28 T -101.3 44.2 NA NA NA
GLY F:73 S:69 21.0 0.28 T -78.6 -6.8 21.0 0.28 0.0
1d0g 1 O14763 100.0 2e-93 X-RAY
 1999-10-22 GLY A:69 R:69 23.0 0.307 T -92.0 21.5 5.0 0.067 0.24 D:P50591:0.24
 HOH
 4.038
 CA
 O
GLY B:69 S:69 27.0 0.36 T -93.0 12.2 6.0 0.08 0.28 E:P50591:0.28
 HOH
 3.214
 N
 O
GLY C:69 T:69 38.0 0.507 T 117.6 -9.1 22.0 0.293 0.214 F:P50591:0.213
 HOH
 2.676
 O
 O
1du3 1 O14763 100.0 2e-93 X-RAY
 2000-09-27 GLY A:69 A:69 27.0 0.36 T -111.5 2.6 8.0 0.107 0.253 D:P50591:0.253
 HOH
 4.968
 N
 O
GLY B:69 B:69 23.0 0.307 T -113.6 8.9 12.0 0.16 0.147 E:P50591:0.147
 HOH
 2.387
 O
 O
GLY C:69 C:69 39.0 0.52 T 89.0 -4.3 25.0 0.333 0.187 F:P50591:0.187
 HOH
 6.910
 N
 O
GLY G:69 G:69 21.0 0.28 T -102.5 27.0 NA NA NA
GLY H:69 H:69 26.0 0.347 T -127.5 9.7 NA NA NA
GLY I:69 I:69 31.0 0.413 T 62.9 -3.7 NA NA NA
2h9g 3 O14763 100.0 2e-93 X-RAY
 2006-08-08 GLY C:69 R:69 47.0 0.627 S -70.2 -19.6 47.0 0.627 0.0
GLY F:69 S:69 63.0 0.84 T -135.1 33.0 NA NA NA
6t3j 5 O14763 100.0 2e-91 X-RAY
 2020-09-16 GLY E:65 E:122 18.0 0.24 T -105.7 32.8 0.0 0.0 0.24 B:None:0.027
A:None:0.24
GLY J:65 J:122 21.0 0.28 T -106.2 32.2 NA NA NA
4i9x 2 O14763 100.0 2e-91 X-RAY
 2013-04-03 GLY C:65 C:122 20.0 0.267 T 96.3 -9.8 20.0 0.267 0.0 HOH
 5.651
 N
 O
GLY D:65 D:122 19.0 0.253 T 96.0 -17.9 19.0 0.253 0.0 HOH
 7.042
 O
 O
4n90 1 O14763 100.0 1e-90 X-RAY
 2014-09-03 GLY A:66 R:69 27.0 0.36 T -68.4 38.2 NA NA NA
GLY B:66 S:69 18.0 0.24 T -81.1 -2.5 NA NA NA
GLY C:66 T:69 18.0 0.24 T 60.6 18.8 1.0 0.013 0.227 F:P50591:0.147
K:None:0.08
1d4v 2 2338420 100.0 1e-82 X-RAY
 1999-11-01 GLY B:54 A:122 29.0 0.387 T -105.7 4.5 13.0 0.173 0.214 A:P50591:0.213
 HOH
 2.730
 O
 O
4od2 3 O14763 100.0 2e-78 X-RAY
 2014-02-05 GLY C:50 S:69 21.0 0.28 T -62.6 5.2 8.0 0.107 0.173 B:None:0.173

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o14763-f1 1 O14763 100.0 0.0 GLY A:122 A:122 22.0 0.293 T 97.2 2.1