Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 22888286 . G A CCDS6035.1:NM_003842.4:c.350aCc>aTc_NP_003833.4:p.117T>I Homo sapiens TNF receptor superfamily member 10b (TNFRSF10B), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3x3f 3 O14763 97.74 2e-94 X-RAY
 2015-12-23 THR C:64 A:117 70.0 0.5 -75.1 138.5 70.0 0.5 0.0 HOH
 3.327
 O
 O
1za3 3 O14763 100.0 2e-93 X-RAY
 2005-06-14 THR C:68 R:64 71.0 0.507 -87.8 122.0 NA NA NA
THR F:68 S:64 74.0 0.529 -82.2 125.8 74.0 0.529 0.0
1d0g 1 O14763 100.0 2e-93 X-RAY
 1999-10-22 THR A:64 R:64 70.0 0.5 -68.3 150.9 64.0 0.457 0.043 D:P50591:0.043
 HOH
 4.332
 CA
 O
THR B:64 S:64 69.0 0.493 -76.0 143.3 69.0 0.493 0.0 HOH
 3.461
 CA
 O
THR C:64 T:64 75.0 0.536 -74.1 154.8 75.0 0.536 0.0 HOH
 3.879
 CG2
 O
1du3 1 O14763 100.0 2e-93 X-RAY
 2000-09-27 THR A:64 A:64 73.0 0.521 -80.3 140.3 4.0 0.029 0.492 D:P50591:0.493
 HOH
 3.601
 O
 O
THR B:64 B:64 61.0 0.436 -95.2 133.5 2.0 0.014 0.422 E:P50591:0.421
 HOH
 4.588
 CG2
 O
THR C:64 C:64 72.0 0.514 -73.4 162.0 4.0 0.029 0.485 F:P50591:0.486
 HOH
 7.113
 O
 O
THR G:64 G:64 70.0 0.5 -82.8 124.3 NA NA NA
THR H:64 H:64 69.0 0.493 -91.9 154.7 NA NA NA
THR I:64 I:64 75.0 0.536 -75.1 166.3 NA NA NA
2h9g 3 O14763 100.0 2e-93 X-RAY
 2006-08-08 THR C:64 R:64 71.0 0.507 -78.7 131.7 49.0 0.35 0.157 A:None:0.157
 HOH
 8.382
 O
 O
THR F:64 S:64 80.0 0.571 -83.5 115.9 NA NA NA
6t3j 5 O14763 100.0 2e-91 X-RAY
 2020-09-16 THR E:60 E:117 63.0 0.45 -74.6 141.4 63.0 0.45 0.0
THR J:60 J:117 62.0 0.443 -75.2 141.9 NA NA NA
4i9x 2 O14763 100.0 2e-91 X-RAY
 2013-04-03 THR C:60 C:117 64.0 0.457 -68.0 132.4 23.0 0.164 0.293 B:Q6RJQ3:0.293
 HOH
 2.654
 OG1
 O
THR D:60 D:117 63.0 0.45 -63.3 134.9 23.0 0.164 0.286 A:Q6RJQ3:0.286
 CA
CA
HOH
 8.365
3.036
2.766
 N
OG1
OG1
 CA
CA
O
4n90 1 O14763 100.0 1e-90 X-RAY
 2014-09-03 THR A:61 R:64 62.0 0.443 -80.1 145.6 NA NA NA
THR B:61 S:64 59.0 0.421 -73.9 138.1 NA NA NA
THR C:61 T:64 61.0 0.436 -79.1 142.4 4.0 0.029 0.407 F:P50591:0.407
1d4v 2 2338420 100.0 1e-82 X-RAY
 1999-11-01 THR B:49 A:117 62.0 0.443 -103.4 146.1 34.0 0.243 0.2 A:P50591:0.2
 HOH
 3.913
 CG2
 O
4od2 3 O14763 100.0 2e-78 X-RAY
 2014-02-05 THR C:45 S:64 72.0 0.514 -65.4 141.9 65.0 0.464 0.05 A:None:0.05

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o14763-f1 1 O14763 100.0 0.0 THR A:117 A:117 69.0 0.493 -64.0 142.6