Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 22888293 . G A CCDS6035.1:NM_003842.4:c.343Cgc>Tgc_NP_003833.4:p.115R>C Homo sapiens TNF receptor superfamily member 10b (TNFRSF10B), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3x3f 3 O14763 97.74 2e-94 X-RAY
 2015-12-23 ARG C:62 A:115 213.0 0.947 E -66.6 131.1 138.0 0.613 0.334 B:None:0.116
A:None:0.262
 HOH
 2.663
 NH1
 O
1za3 3 O14763 100.0 2e-93 X-RAY
 2005-06-14 ARG C:66 R:62 208.0 0.924 E -75.1 122.2 NA NA NA
ARG F:66 S:62 219.0 0.973 E -66.4 139.6 112.0 0.498 0.475 A:None:0.476
1d0g 1 O14763 100.0 2e-93 X-RAY
 1999-10-22 ARG A:62 R:62 218.0 0.969 E -81.4 134.3 53.0 0.236 0.733 D:P50591:0.733
 HOH
 3.130
 O
 O
ARG B:62 S:62 221.0 0.982 E -68.4 139.2 72.0 0.32 0.662 E:P50591:0.662
 HOH
 3.040
 NH1
 O
ARG C:62 T:62 225.0 1.0 E -66.5 137.1 79.0 0.351 0.649 F:P50591:0.649
 HOH
 4.211
 CB
 O
1du3 1 O14763 100.0 2e-93 X-RAY
 2000-09-27 ARG A:62 A:62 197.0 0.876 E -75.6 135.5 42.0 0.187 0.689 D:P50591:0.689
 HOH
 2.646
 N
 O
ARG B:62 B:62 149.0 NA E -59.4 149.8 54.0 NA NA E:P50591:NA
 HOH
 3.090
 NH1
 O
ARG C:62 C:62 207.0 0.92 -47.7 153.4 47.0 0.209 0.711 F:P50591:0.711
 HOH
 7.140
 NH1
 O
ARG G:62 G:62 198.0 0.88 -52.9 161.6 NA NA NA
ARG H:62 H:62 188.0 0.836 E -65.5 159.4 NA NA NA
ARG I:62 I:62 160.0 0.711 E -61.8 157.4 NA NA NA
2h9g 3 O14763 100.0 2e-93 X-RAY
 2006-08-08 ARG C:62 R:62 212.0 0.942 E -70.0 126.6 129.0 0.573 0.369 B:None:0.276
A:None:0.107
 HOH
 4.694
 N
 O
ARG F:62 S:62 210.0 0.933 E -69.3 134.3 NA NA NA
6t3j 5 O14763 100.0 2e-91 X-RAY
 2020-09-16 ARG E:58 E:115 220.0 0.978 E -63.9 133.6 180.0 0.8 0.178 B:None:0.178
ARG J:58 J:115 210.0 0.933 E -62.5 133.6 NA NA NA
4i9x 2 O14763 100.0 2e-91 X-RAY
 2013-04-03 ARG C:58 C:115 192.0 0.853 E -58.5 136.5 98.0 0.436 0.417 B:Q6RJQ3:0.418
 NAG
NAG
HOH
 6.408
8.048
2.695
 NH2
NH2
O
 N2
O7
O
ARG D:58 D:115 200.0 0.889 E -65.0 136.0 95.0 0.422 0.467 A:Q6RJQ3:0.467
 NAG
NAG
CA
CA
HOH
 6.485
7.527
7.426
2.780
3.080
 NH2
NH1
C
O
O
 N2
O7
CA
CA
O
4n90 1 O14763 100.0 1e-90 X-RAY
 2014-09-03 ARG A:59 R:62 217.0 0.964 E -73.5 136.5 NA NA NA
ARG B:59 S:62 223.0 0.991 E -71.7 140.4 NA NA NA
ARG C:59 T:62 219.0 0.973 E -63.8 154.7 40.0 0.178 0.795 F:P50591:0.796
1d4v 2 2338420 100.0 1e-82 X-RAY
 1999-11-01 ARG B:47 A:115 189.0 0.84 E -63.8 139.4 53.0 0.236 0.604 A:P50591:0.604
 HOH
 2.998
 N
 O
4od2 3 O14763 100.0 2e-78 X-RAY
 2014-02-05 ARG C:43 S:62 210.0 0.933 E -68.9 149.2 182.0 0.809 0.124 A:None:0.124

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o14763-f1 1 O14763 100.0 0.0 ARG A:115 A:115 224.0 0.996 E -64.4 140.4