Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr8 | 54960632 | . | A | C | CCDS6157.1:NM_006330.3:c.686aTt>aGt_NP_006321.1:p.229I>S | Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5sym | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2016-10-26 | ILE | A:229 | A:229 | 84.0 | 0.48 | -127.3 | 158.0 | 84.0 | 0.48 | 0.0 |
EDO CL HOH |
8.890 1.954 2.686 |
HD11 H HA |
O1 CL O |
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| ILE | B:229 | B:229 | 92.0 | 0.526 | -123.5 | 159.9 | NA | NA | NA | ||||||||||||||
| 6qgs | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2020-02-05 | ILE | A:232 | B:229 | 189.0 | 1.0 | 52.8 | 360.0 | 189.0 | 1.0 | 0.0 |
HOH |
2.355 |
N |
O |
|||
| ILE | B:232 | D:229 | 169.0 | 0.966 | 49.7 | 360.0 | NA | NA | NA | ||||||||||||||
| ILE | C:232 | A:229 | 177.0 | 1.0 | 51.7 | 360.0 | NA | NA | NA | ||||||||||||||
| ILE | D:232 | C:229 | 172.0 | 0.983 | 57.2 | 360.0 | NA | NA | NA | ||||||||||||||
| ILE | E:232 | E:229 | 188.0 | 1.0 | 35.9 | 360.0 | NA | NA | NA | ||||||||||||||
| ILE | F:232 | F:229 | 151.0 | 0.863 | 43.5 | 360.0 | NA | NA | NA | ||||||||||||||
| 6qgo | 1 | O75608 | 99.57 | 3e-173 |
X-RAY |
2020-02-05 | ILE | A:232 | B:229 | 191.0 | 1.0 | 45.4 | 360.0 | 191.0 | 1.0 | 0.0 |
HOH |
2.364 |
N |
O |
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| ILE | B:232 | C:229 | 192.0 | 1.0 | 48.0 | 360.0 | NA | NA | NA | ||||||||||||||
| 6qgq | 2 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | ILE | B:232 | B:229 | 119.0 | 0.68 | S | -78.5 | -31.6 | NA | NA | NA | ||||||
| 6qgn | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | ILE | A:232 | A:229 | 122.0 | 0.697 | -116.4 | -16.2 | 122.0 | 0.697 | 0.0 |
HOH |
3.040 |
N |
O |
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| ILE | B:232 | B:229 | 119.0 | 0.68 | -97.3 | -12.4 | NA | NA | NA | ||||||||||||||
| ILE | C:232 | C:229 | 125.0 | 0.714 | -79.9 | -13.5 | NA | NA | NA | ||||||||||||||
| ILE | D:232 | D:229 | 114.0 | 0.651 | -77.1 | -4.7 | NA | NA | NA | ||||||||||||||
| 6qgq | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | ILE | A:232 | A:229 | 114.0 | 0.651 | -74.5 | -37.3 | 114.0 | 0.651 | 0.0 |
HOH |
6.582 |
N |
O |
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| ILE | C:232 | C:229 | 183.0 | 1.0 | 38.2 | 360.0 | NA | NA | NA | ||||||||||||||
| ILE | D:232 | D:229 | 186.0 | 1.0 | 42.4 | 360.0 | NA | NA | NA | ||||||||||||||
| 1fj2 | 1 | O75608 | 100.0 | 9e-169 |
X-RAY |
2000-11-29 | ILE | A:231 | A:224 | 197.0 | 1.0 | 89.8 | 360.0 | 197.0 | 1.0 | 0.0 |
BR BR HOH |
3.165 8.349 5.195 |
N N O |
BR BR O |
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| ILE | B:231 | B:224 | 182.0 | 1.0 | 83.1 | 360.0 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o75608-f1 | 1 | O75608 | 100.0 | 4e-174 | ILE | A:229 | A:229 | 91.0 | 0.52 | -119.0 | 137.5 | ||