Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr8 | 54963582 | . | G | A | CCDS6157.1:NM_006330.3:c.629tCg>tTg_NP_006321.1:p.210S>L | Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5sym | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2016-10-26 | SER | A:210 | A:210 | 53.0 | 0.461 | -123.3 | 166.1 | 53.0 | 0.461 | 0.0 |
EDO EDO HOH |
1.773 2.752 2.709 |
HG OG O |
O2 O1 O |
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| SER | B:210 | B:210 | 60.0 | 0.522 | -123.2 | 169.8 | NA | NA | NA | ||||||||||||||
| 6qgs | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2020-02-05 | SER | A:213 | B:210 | 52.0 | 0.452 | -121.4 | 154.5 | 52.0 | 0.452 | 0.0 |
HOH |
2.726 |
O |
O |
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| SER | B:213 | D:210 | 51.0 | 0.443 | -132.3 | 170.9 | NA | NA | NA | ||||||||||||||
| SER | C:213 | A:210 | 55.0 | 0.478 | -127.0 | 163.1 | NA | NA | NA | ||||||||||||||
| SER | D:213 | C:210 | 53.0 | 0.461 | -133.6 | 164.0 | NA | NA | NA | ||||||||||||||
| SER | E:213 | E:210 | 52.0 | 0.452 | -131.3 | 163.3 | NA | NA | NA | ||||||||||||||
| SER | F:213 | F:210 | 48.0 | 0.417 | -128.7 | 163.0 | NA | NA | NA | ||||||||||||||
| 6qgo | 1 | O75608 | 99.57 | 3e-173 |
X-RAY |
2020-02-05 | SER | A:213 | B:210 | 49.0 | 0.426 | -133.8 | 165.1 | 49.0 | 0.426 | 0.0 |
HOH |
4.203 |
CA |
O |
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| SER | B:213 | C:210 | 49.0 | 0.426 | -120.1 | 167.1 | NA | NA | NA | ||||||||||||||
| 6qgq | 2 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | SER | B:213 | B:210 | 55.0 | 0.478 | -137.4 | 155.0 | NA | NA | NA | |||||||
| 6qgn | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | SER | A:213 | A:210 | 48.0 | 0.417 | -121.6 | 168.8 | 48.0 | 0.417 | 0.0 |
HOH |
3.392 |
OG |
O |
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| SER | B:213 | B:210 | 46.0 | 0.4 | -109.1 | 175.4 | NA | NA | NA | ||||||||||||||
| SER | C:213 | C:210 | 52.0 | 0.452 | -136.0 | 157.2 | NA | NA | NA | ||||||||||||||
| SER | D:213 | D:210 | 54.0 | 0.47 | -127.6 | 174.1 | NA | NA | NA | ||||||||||||||
| 6qgq | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | SER | A:213 | A:210 | 48.0 | 0.417 | -122.7 | 163.2 | 48.0 | 0.417 | 0.0 |
GOL HOH |
3.488 3.212 |
OG OG |
HO2 O |
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| SER | C:213 | C:210 | 51.0 | 0.443 | -130.4 | 168.8 | NA | NA | NA | ||||||||||||||
| SER | D:213 | D:210 | 54.0 | 0.47 | -125.2 | 157.0 | NA | NA | NA | ||||||||||||||
| 1fj2 | 1 | O75608 | 100.0 | 9e-169 |
X-RAY |
2000-11-29 | SER | A:212 | A:205 | 37.0 | 0.322 | -102.6 | -178.6 | 37.0 | 0.322 | 0.0 |
BR BR BR HOH |
8.832 7.094 2.810 3.984 |
OG C OG CA |
BR BR BR O |
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| SER | B:212 | B:205 | 38.0 | 0.33 | -95.2 | -174.4 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o75608-f1 | 1 | O75608 | 100.0 | 4e-174 | SER | A:210 | A:210 | 48.0 | 0.417 | -108.9 | 159.6 | ||