Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr8 | 54963621 | . | T | A | CCDS6157.1:NM_006330.3:c.590aAt>aTt_NP_006321.1:p.197N>I | Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5sym | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2016-10-26 | ASN | A:197 | A:197 | 53.0 | 0.331 | G | -110.8 | 17.1 | 53.0 | 0.331 | 0.0 |
HOH |
2.068 |
HD21 |
O |
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| ASN | B:197 | B:197 | 49.0 | 0.306 | G | -103.6 | 14.6 | NA | NA | NA | |||||||||||||
| 6qgs | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2020-02-05 | ASN | A:200 | B:197 | 51.0 | 0.319 | G | -103.8 | 19.3 | 51.0 | 0.319 | 0.0 |
HOH |
6.397 |
N |
O |
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| ASN | B:200 | D:197 | 48.0 | 0.3 | G | -109.6 | 4.9 | NA | NA | NA | |||||||||||||
| ASN | C:200 | A:197 | 49.0 | 0.306 | G | -92.0 | 11.1 | NA | NA | NA | |||||||||||||
| ASN | D:200 | C:197 | 44.0 | 0.275 | G | -97.0 | 0.2 | NA | NA | NA | |||||||||||||
| ASN | E:200 | E:197 | 48.0 | 0.3 | G | -111.0 | 13.0 | NA | NA | NA | |||||||||||||
| ASN | F:200 | F:197 | 48.0 | 0.3 | G | -113.5 | 22.3 | NA | NA | NA | |||||||||||||
| 6qgo | 1 | O75608 | 99.57 | 3e-173 |
X-RAY |
2020-02-05 | ASN | A:200 | B:197 | 50.0 | 0.312 | G | -112.3 | 9.4 | 50.0 | 0.312 | 0.0 |
HOH |
7.525 |
C |
O |
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| ASN | B:200 | C:197 | 49.0 | 0.306 | G | -122.1 | 22.4 | NA | NA | NA | |||||||||||||
| 6qgq | 2 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | ASN | B:200 | B:197 | 47.0 | 0.294 | G | -99.1 | 13.2 | NA | NA | NA | ||||||
| 6qgn | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | ASN | A:200 | A:197 | 50.0 | 0.312 | G | -106.8 | 16.2 | 50.0 | 0.312 | 0.0 |
HOH |
2.424 |
O |
O |
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| ASN | B:200 | B:197 | 47.0 | 0.294 | G | -109.0 | 11.6 | NA | NA | NA | |||||||||||||
| ASN | C:200 | C:197 | 48.0 | 0.3 | G | -104.4 | 5.7 | NA | NA | NA | |||||||||||||
| ASN | D:200 | D:197 | 44.0 | 0.275 | G | -101.1 | 7.0 | NA | NA | NA | |||||||||||||
| 6qgq | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | ASN | A:200 | A:197 | 51.0 | 0.319 | G | -111.8 | 13.2 | 51.0 | 0.319 | 0.0 |
HOH |
3.140 |
ND2 |
O |
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| ASN | C:200 | C:197 | 52.0 | 0.325 | G | -108.2 | 19.0 | NA | NA | NA | |||||||||||||
| ASN | D:200 | D:197 | 41.0 | 0.256 | G | -119.9 | 6.6 | NA | NA | NA | |||||||||||||
| 1fj2 | 1 | O75608 | 100.0 | 9e-169 |
X-RAY |
2000-11-29 | ASN | A:199 | A:192 | 55.0 | 0.344 | G | -114.9 | 19.2 | 55.0 | 0.344 | 0.0 |
BR BR BR BR HOH |
3.469 7.275 7.922 3.834 2.726 |
ND2 O C O OD1 |
BR BR BR BR O |
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| ASN | B:199 | B:192 | 46.0 | 0.287 | G | -104.3 | 11.4 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o75608-f1 | 1 | O75608 | 100.0 | 4e-174 | ASN | A:197 | A:197 | 47.0 | 0.294 | G | -96.2 | 0.9 | |