Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr8 | 54963628 | . | G | A | CCDS6157.1:NM_006330.3:c.583Cca>Tca_NP_006321.1:p.195P>S | Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5sym | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2016-10-26 | PRO | A:195 | A:195 | 59.0 | 0.407 | G | -69.3 | -19.1 | 59.0 | 0.407 | 0.0 |
HOH |
3.027 |
HD3 |
O |
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| PRO | B:195 | B:195 | 63.0 | 0.434 | G | -63.6 | -23.5 | NA | NA | NA | |||||||||||||
| 6qgs | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2020-02-05 | PRO | A:198 | B:195 | 63.0 | 0.434 | G | -66.1 | -13.2 | 63.0 | 0.434 | 0.0 |
HOH |
4.252 |
CG |
O |
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| PRO | B:198 | D:195 | 71.0 | 0.49 | G | -65.3 | -12.6 | NA | NA | NA | |||||||||||||
| PRO | C:198 | A:195 | 61.0 | 0.421 | G | -67.0 | -11.7 | NA | NA | NA | |||||||||||||
| PRO | D:198 | C:195 | 69.0 | 0.476 | G | -63.3 | -9.8 | NA | NA | NA | |||||||||||||
| PRO | E:198 | E:195 | 61.0 | 0.421 | G | -66.1 | -11.0 | NA | NA | NA | |||||||||||||
| PRO | F:198 | F:195 | 62.0 | 0.428 | G | -68.8 | -15.1 | NA | NA | NA | |||||||||||||
| 6qgo | 1 | O75608 | 99.57 | 3e-173 |
X-RAY |
2020-02-05 | PRO | A:198 | B:195 | 70.0 | 0.483 | G | -65.4 | -14.0 | 70.0 | 0.483 | 0.0 |
HOH |
6.406 |
O |
O |
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| PRO | B:198 | C:195 | 67.0 | 0.462 | G | -63.7 | -14.6 | NA | NA | NA | |||||||||||||
| 6qgq | 2 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | PRO | B:198 | B:195 | 64.0 | 0.441 | G | -66.7 | -8.0 | NA | NA | NA | ||||||
| 6qgn | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | PRO | A:198 | A:195 | 69.0 | 0.476 | G | -63.8 | -16.3 | 69.0 | 0.476 | 0.0 |
HOH |
2.632 |
O |
O |
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| PRO | B:198 | B:195 | 63.0 | 0.434 | G | -64.9 | -20.7 | NA | NA | NA | |||||||||||||
| PRO | C:198 | C:195 | 57.0 | 0.393 | G | -73.6 | -17.0 | NA | NA | NA | |||||||||||||
| PRO | D:198 | D:195 | 68.0 | 0.469 | G | -68.8 | -17.7 | NA | NA | NA | |||||||||||||
| 6qgq | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | PRO | A:198 | A:195 | 63.0 | 0.434 | G | -64.0 | -8.6 | 63.0 | 0.434 | 0.0 |
HOH |
4.608 |
N |
O |
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| PRO | C:198 | C:195 | 68.0 | 0.469 | G | -65.1 | -9.1 | NA | NA | NA | |||||||||||||
| PRO | D:198 | D:195 | 67.0 | 0.462 | G | -70.1 | -8.1 | NA | NA | NA | |||||||||||||
| 1fj2 | 1 | O75608 | 100.0 | 9e-169 |
X-RAY |
2000-11-29 | PRO | A:197 | A:190 | 63.0 | 0.434 | G | -74.7 | -11.0 | 63.0 | 0.434 | 0.0 |
BR BR BR HOH |
8.008 6.892 7.714 3.854 |
N O O CG |
BR BR BR O |
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| PRO | B:197 | B:190 | 60.0 | 0.414 | G | -60.2 | -25.9 | NA | NA | NA | |||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o75608-f1 | 1 | O75608 | 100.0 | 4e-174 | PRO | A:195 | A:195 | 73.0 | 0.503 | G | -64.3 | -22.6 | |