Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr8 | 54963739 | . | C | A | CCDS6157.1:NM_006330.3:c.472Ggt>Tgt_NP_006321.1:p.158G>C | Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5sym | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2016-10-26 | GLY | A:158 | A:158 | 29.0 | 0.387 | 70.3 | -167.5 | 29.0 | 0.387 | 0.0 |
HOH |
1.953 |
H |
O |
|||
| GLY | B:158 | B:158 | 25.0 | 0.333 | 72.6 | -156.2 | NA | NA | NA | ||||||||||||||
| 6qgs | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2020-02-05 | GLY | A:161 | B:158 | 31.0 | 0.413 | 65.2 | 172.4 | 31.0 | 0.413 | 0.0 |
HOH |
2.821 |
O |
O |
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| GLY | B:161 | D:158 | 34.0 | 0.453 | 70.2 | 177.3 | NA | NA | NA | ||||||||||||||
| GLY | C:161 | A:158 | 30.0 | 0.4 | 69.2 | 179.8 | NA | NA | NA | ||||||||||||||
| GLY | D:161 | C:158 | 24.0 | 0.32 | 69.3 | -168.4 | NA | NA | NA | ||||||||||||||
| GLY | E:161 | E:158 | 54.0 | 0.72 | 67.8 | 14.6 | NA | NA | NA | ||||||||||||||
| GLY | F:161 | F:158 | 44.0 | 0.587 | 73.6 | 141.6 | NA | NA | NA | ||||||||||||||
| 6qgo | 1 | O75608 | 99.57 | 3e-173 |
X-RAY |
2020-02-05 | GLY | A:161 | B:158 | 28.0 | 0.373 | 67.9 | 175.7 | 28.0 | 0.373 | 0.0 |
HOH |
9.945 |
O |
O |
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| GLY | B:161 | C:158 | 25.0 | 0.333 | 67.8 | -130.7 | NA | NA | NA | ||||||||||||||
| 6qgq | 2 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | GLY | B:161 | B:158 | 53.0 | 0.707 | 84.5 | 35.2 | NA | NA | NA | |||||||
| 6qgn | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | GLY | A:161 | A:158 | 23.0 | 0.307 | 61.0 | -123.0 | 23.0 | 0.307 | 0.0 |
HOH |
4.978 |
N |
O |
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| GLY | B:161 | B:158 | 62.0 | 0.827 | -87.8 | -13.8 | NA | NA | NA | ||||||||||||||
| GLY | C:161 | C:158 | 21.0 | 0.28 | 79.4 | -153.7 | NA | NA | NA | ||||||||||||||
| GLY | D:161 | D:158 | 12.0 | 0.16 | 55.4 | -127.4 | NA | NA | NA | ||||||||||||||
| 6qgq | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | GLY | A:161 | A:158 | 21.0 | 0.28 | 77.2 | -158.7 | 21.0 | 0.28 | 0.0 |
HOH |
9.642 |
N |
O |
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| GLY | C:161 | C:158 | 25.0 | 0.333 | 68.5 | -153.8 | NA | NA | NA | ||||||||||||||
| GLY | D:161 | D:158 | 29.0 | 0.387 | 68.6 | 178.7 | NA | NA | NA | ||||||||||||||
| 1fj2 | 1 | O75608 | 100.0 | 9e-169 |
X-RAY |
2000-11-29 | GLY | A:160 | A:153 | 28.0 | 0.373 | 66.7 | -164.3 | 28.0 | 0.373 | 0.0 |
HOH |
2.682 |
O |
O |
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| GLY | B:160 | B:153 | 72.0 | 0.96 | -87.6 | -12.0 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o75608-f1 | 1 | O75608 | 100.0 | 4e-174 | GLY | A:158 | A:158 | 93.0 | 1.0 | S | -84.4 | 4.4 | |