Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 54965232 . G A CCDS6157.1:NM_006330.3:c.445Cgg>Tgg_NP_006321.1:p.149R>W Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5sym 1 O75608 100.0 9e-174 X-RAY
 2016-10-26 ARG A:149 A:149 119.0 0.529 G -55.8 -35.2 119.0 0.529 0.0 71Q
EDO
HOH
 2.677
6.088
2.011
 HD3
HH12
HH11
 C15
O1
O
ARG B:149 B:149 106.0 0.471 G -55.3 -38.3 NA NA NA
6qgs 1 O75608 100.0 9e-174 X-RAY
 2020-02-05 ARG A:152 B:149 58.0 0.258 G -59.0 -29.6 58.0 0.258 0.0 HOH
 7.425
 N
 O
ARG B:152 D:149 125.0 0.556 G -59.1 -29.8 NA NA NA
ARG C:152 A:149 130.0 0.578 G -62.0 -31.5 NA NA NA
ARG D:152 C:149 55.0 0.244 G -67.1 -27.7 NA NA NA
ARG E:152 E:149 75.0 0.333 G -63.5 -32.2 NA NA NA
ARG F:152 F:149 116.0 0.516 G -63.1 -24.9 NA NA NA
6qgo 1 O75608 99.57 3e-173 X-RAY
 2020-02-05 ARG A:152 B:149 109.0 0.484 G -52.6 -53.0 109.0 0.484 0.0 PLM
HOH
 3.402
9.936
 NH1
N
 CC
O
ARG B:152 C:149 94.0 0.418 G -64.3 -41.8 NA NA NA
6qgq 2 O75608 99.57 1e-172 X-RAY
 2020-02-05 ARG B:152 B:149 110.0 0.489 G -55.6 -30.4 NA NA NA
6qgn 1 O75608 99.57 1e-172 X-RAY
 2020-02-05 ARG A:152 A:149 98.0 0.436 G -61.4 -29.5 98.0 0.436 0.0 J1W
HOH
 3.050
2.746
 CD
NH1
 H022
O
ARG B:152 B:149 111.0 0.493 G -49.7 -50.7 NA NA NA
ARG C:152 C:149 100.0 0.444 G -48.4 -33.0 NA NA NA
ARG D:152 D:149 99.0 0.44 G -65.9 -39.9 NA NA NA
6qgq 1 O75608 99.57 1e-172 X-RAY
 2020-02-05 ARG A:152 A:149 59.0 0.262 G -49.8 -58.8 59.0 0.262 0.0 HOH
 8.560
 NH2
 O
ARG C:152 C:149 60.0 0.267 G -60.4 -38.5 NA NA NA
ARG D:152 D:149 87.0 0.387 G -37.6 -57.6 NA NA NA
1fj2 1 O75608 100.0 9e-169 X-RAY
 2000-11-29 ARG A:151 A:144 101.0 0.449 G -64.5 -39.3 101.0 0.449 0.0 BR
BR
HOH
 4.553
6.388
2.820
 N
NE
O
 BR
BR
O
ARG B:151 B:144 74.0 0.329 G -66.9 -31.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75608-f1 1 O75608 100.0 4e-174 ARG A:149 A:149 69.0 0.307 G -51.8 -39.7