Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr8 54974822 . G A CCDS6157.1:NM_006330.3:c.278gCa>gTa_NP_006321.1:p.93A>V Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5sym 1 O75608 100.0 9e-174 X-RAY
 2016-10-26 ALA A:93 A:93 0.0 0.0 H -64.7 -38.4 0.0 0.0 0.0 EDO
HOH
 6.968
2.810
 HB1
HB3
 O2
O
ALA B:93 B:93 0.0 0.0 H -65.6 -34.5 NA NA NA
6qgs 1 O75608 100.0 9e-174 X-RAY
 2020-02-05 ALA A:96 B:93 1.0 0.009 H -62.3 -36.4 1.0 0.009 0.0 HOH
 3.548
 CB
 O
ALA B:96 D:93 1.0 0.009 H -61.9 -29.8 NA NA NA
ALA C:96 A:93 0.0 0.0 H -63.1 -43.6 NA NA NA
ALA D:96 C:93 1.0 0.009 H -61.3 -33.9 NA NA NA
ALA E:96 E:93 2.0 0.017 H -65.8 -41.6 NA NA NA
ALA F:96 F:93 0.0 0.0 H -61.9 -39.4 NA NA NA
6qgo 1 O75608 99.57 3e-173 X-RAY
 2020-02-05 ALA A:96 B:93 0.0 0.0 H -62.2 -34.7 0.0 0.0 0.0 HOH
 6.826
 N
 O
ALA B:96 C:93 1.0 0.009 H -69.4 -32.7 NA NA NA
6qgq 2 O75608 99.57 1e-172 X-RAY
 2020-02-05 ALA B:96 B:93 0.0 0.0 H -53.9 -43.2 NA NA NA
6qgn 1 O75608 99.57 1e-172 X-RAY
 2020-02-05 ALA A:96 A:93 1.0 0.009 H -64.1 -43.0 1.0 0.009 0.0 HOH
 6.210
 N
 O
ALA B:96 B:93 1.0 0.009 H -62.3 -46.3 NA NA NA
ALA C:96 C:93 0.0 0.0 H -59.1 -40.9 NA NA NA
ALA D:96 D:93 1.0 0.009 H -61.4 -37.4 NA NA NA
6qgq 1 O75608 99.57 1e-172 X-RAY
 2020-02-05 ALA A:96 A:93 0.0 0.0 H -56.1 -41.1 0.0 0.0 0.0
ALA C:96 C:93 1.0 0.009 H -60.9 -38.0 NA NA NA
ALA D:96 D:93 0.0 0.0 H -63.9 -41.1 NA NA NA
1fj2 1 O75608 100.0 9e-169 X-RAY
 2000-11-29 ALA A:95 A:88 1.0 0.009 H -58.9 -42.3 1.0 0.009 0.0 HOH
 3.609
 CB
 O
ALA B:95 B:88 1.0 0.009 H -65.5 -42.3 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-o75608-f1 1 O75608 100.0 4e-174 ALA A:93 A:93 0.0 0.0 H -62.8 -39.7