Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr8 | 55014340 | . | G | A | CCDS6157.1:NM_006330.3:c.44cCc>cTc_NP_006321.1:p.15P>L | Homo sapiens lysophospholipase I (LYPLA1), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 5sym | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2016-10-26 | PRO | A:15 | A:15 | 90.0 | 0.621 | -70.0 | 159.0 | 90.0 | 0.621 | 0.0 |
EDO CL HOH |
6.971 5.896 2.681 |
HA HA HG2 |
O2 CL O |
|||
| PRO | B:15 | B:15 | 70.0 | 0.483 | -75.1 | 162.3 | NA | NA | NA | ||||||||||||||
| 6qgs | 1 | O75608 | 100.0 | 9e-174 |
X-RAY |
2020-02-05 | PRO | A:18 | B:15 | 90.0 | 0.621 | -69.0 | 153.5 | 90.0 | 0.621 | 0.0 | |||||||
| PRO | B:18 | D:15 | 98.0 | 0.676 | -73.9 | 168.7 | NA | NA | NA | ||||||||||||||
| PRO | C:18 | A:15 | 80.0 | 0.552 | -78.7 | 165.0 | NA | NA | NA | ||||||||||||||
| PRO | D:18 | C:15 | 88.0 | 0.607 | -65.4 | 148.1 | NA | NA | NA | ||||||||||||||
| PRO | E:18 | E:15 | 79.0 | 0.545 | -74.8 | 151.2 | NA | NA | NA | ||||||||||||||
| PRO | F:18 | F:15 | 90.0 | 0.621 | -72.0 | 157.1 | NA | NA | NA | ||||||||||||||
| 6qgo | 1 | O75608 | 99.57 | 3e-173 |
X-RAY |
2020-02-05 | PRO | A:18 | B:15 | 75.0 | 0.517 | -66.8 | 148.2 | 75.0 | 0.517 | 0.0 |
HOH |
3.717 |
CA |
O |
|||
| PRO | B:18 | C:15 | 93.0 | 0.641 | -70.2 | 176.1 | NA | NA | NA | ||||||||||||||
| 6qgq | 2 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | PRO | B:18 | B:15 | 80.0 | 0.552 | -78.7 | 159.9 | NA | NA | NA | |||||||
| 6qgn | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | PRO | A:18 | A:15 | 88.0 | 0.607 | -69.8 | 163.7 | 88.0 | 0.607 | 0.0 |
HOH |
3.663 |
CA |
O |
|||
| PRO | B:18 | B:15 | 88.0 | 0.607 | -76.1 | 164.7 | NA | NA | NA | ||||||||||||||
| PRO | C:18 | C:15 | 92.0 | 0.634 | -66.5 | 156.9 | NA | NA | NA | ||||||||||||||
| PRO | D:18 | D:15 | 95.0 | 0.655 | -77.0 | 161.0 | NA | NA | NA | ||||||||||||||
| 6qgq | 1 | O75608 | 99.57 | 1e-172 |
X-RAY |
2020-02-05 | PRO | A:18 | A:15 | 89.0 | 0.614 | -80.3 | 164.4 | 89.0 | 0.614 | 0.0 |
HOH |
3.349 |
CB |
O |
|||
| PRO | C:18 | C:15 | 75.0 | 0.517 | -71.6 | 155.2 | NA | NA | NA | ||||||||||||||
| PRO | D:18 | D:15 | 90.0 | 0.621 | -74.6 | 165.9 | NA | NA | NA | ||||||||||||||
| 1fj2 | 1 | O75608 | 100.0 | 9e-169 |
X-RAY |
2000-11-29 | PRO | A:17 | A:10 | 79.0 | 0.545 | -69.1 | 155.9 | 79.0 | 0.545 | 0.0 |
BR BR HOH |
3.915 9.776 2.587 |
CA C O |
BR BR O |
|||
| PRO | B:17 | B:10 | 75.0 | 0.517 | -67.0 | 154.7 | NA | NA | NA | ||||||||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-o75608-f1 | 1 | O75608 | 100.0 | 4e-174 | PRO | A:15 | A:15 | 83.0 | 0.572 | -66.5 | 147.8 | ||