Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100403910 . T A CCDS6728.1:NM_002486.4:c.190Tac>Aac_NP_002477.1:p.64Y>N Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 TYR A:64 A:64 63.0 0.274 -109.2 65.7 63.0 0.274 0.0 HOH
 9.718
 N
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 TYR A:64 A:64 187.0 0.813 T 51.6 104.6 187.0 0.813 0.0 HOH
 3.090
 OH
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 TYR A:64 A:64 36.0 0.157 H -124.8 42.4 36.0 0.157 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 TYR A:64 A:64 36.0 0.157 H -136.4 14.8 36.0 0.157 0.0 HOH
 3.684
 C
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 TYR A:64 A5:64 39.0 NA -109.2 65.8 39.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 TYR A:46 A:64 53.0 0.23 H -141.9 20.0 53.0 0.23 0.0
TYR C:46 C:64 41.0 0.178 H -141.4 19.7 NA NA NA
TYR F:46 F:64 53.0 0.23 H -141.4 20.7 NA NA NA
TYR H:46 I:64 77.0 0.335 H -140.6 21.6 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 TYR A:45 C:64 104.0 0.452 H -131.2 34.8 104.0 0.452 0.0 HOH
 5.445
 CE2
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 TYR A:46 A:64 69.0 0.3 H -133.7 24.9 69.0 0.3 0.0
TYR C:46 D:64 71.0 0.309 H -133.6 25.0 NA NA NA
TYR E:46 G:64 73.0 0.317 H -133.6 24.6 NA NA NA
TYR G:46 J:64 68.0 0.296 H -133.7 24.9 NA NA NA
TYR I:46 M:64 70.0 0.304 H -133.6 24.9 NA NA NA
TYR K:46 P:64 73.0 0.317 H -133.6 24.5 NA NA NA
TYR M:46 S:64 69.0 0.3 H -133.7 24.9 NA NA NA
TYR O:46 V:64 68.0 0.296 H -133.7 24.7 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 TYR A:42 C:64 77.0 0.335 H -118.0 27.7 77.0 0.335 0.0 HOH
 6.684
 O
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 TYR A:45 A:64 57.0 0.248 H -141.4 7.9 57.0 0.248 0.0 HOH
 3.954
 C
 O
TYR B:45 B:64 57.0 0.248 H -121.2 24.6 NA NA NA
TYR C:45 C:64 59.0 0.257 H -129.3 17.0 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 TYR A:45 C:64 123.0 0.535 H -141.7 35.8 123.0 0.535 0.0 HOH
 3.364
 CA
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 TYR A:45 A:64 63.0 0.274 H -131.0 23.7 63.0 0.274 0.0 HOH
 3.475
 OH
 O
TYR B:45 B:64 82.0 0.357 H -131.6 12.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 TYR A:64 A:64 42.0 0.183 H -125.2 10.7