Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100407483 . A C CCDS6728.1:NM_002486.4:c.466Act>Cct_NP_002477.1:p.156T>P Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 THR A:156 A:156 4.0 0.029 G -55.6 -24.9 4.0 0.029 0.0 HOH
 3.663
 OG1
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 THR A:156 A:156 4.0 0.029 G -73.0 -2.1 4.0 0.029 0.0 HOH
 4.856
 OG1
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 THR A:156 A:156 1.0 0.007 G -59.4 -17.8 1.0 0.007 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 THR A:156 A:156 4.0 0.029 G -58.7 -6.0 4.0 0.029 0.0 HOH
 8.355
 N
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 THR A:156 A5:156 52.0 NA G -55.6 -24.9 52.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 THR A:138 A:156 3.0 0.021 G -63.3 -24.5 3.0 0.021 0.0
THR C:138 C:156 2.0 0.014 G -63.1 -24.3 NA NA NA
THR F:138 F:156 3.0 0.021 G -63.8 -22.3 NA NA NA
THR H:138 I:156 2.0 0.014 G -63.4 -22.6 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 THR A:137 C:156 4.0 0.029 G -68.1 -4.5 4.0 0.029 0.0 HOH
 8.947
 N
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 THR A:138 A:156 3.0 0.021 G -66.7 -20.4 3.0 0.021 0.0
THR C:138 D:156 2.0 0.014 G -66.7 -20.3 NA NA NA
THR E:138 G:156 2.0 0.014 G -66.7 -20.3 NA NA NA
THR G:138 J:156 2.0 0.014 G -66.5 -20.3 NA NA NA
THR I:138 M:156 2.0 0.014 G -66.6 -20.4 NA NA NA
THR K:138 P:156 2.0 0.014 G -66.7 -20.3 NA NA NA
THR M:138 S:156 2.0 0.014 G -66.4 -20.3 NA NA NA
THR O:138 V:156 3.0 0.021 G -66.6 -20.3 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 THR A:134 C:156 4.0 0.029 G -60.2 -25.8 4.0 0.029 0.0 HOH
 3.413
 HG1
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 THR A:137 A:156 1.0 0.007 G -72.6 -7.5 1.0 0.007 0.0 HOH
 4.254
 O
 O
THR B:137 B:156 1.0 0.007 G -66.3 -3.2 NA NA NA
THR C:137 C:156 4.0 0.029 G -65.0 -15.8 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 THR A:137 C:156 3.0 0.021 G -69.3 -11.9 3.0 0.021 0.0 HOH
 5.921
 N
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 THR A:137 A:156 3.0 0.021 G -67.1 -10.4 3.0 0.021 0.0 HOH
 3.279
 OG1
 O
THR B:137 B:156 1.0 0.007 G -69.9 -8.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 THR A:156 A:156 1.0 0.007 G -62.5 -22.1