Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100407494 . A C CCDS6728.1:NM_002486.4:c.477gaA>gaC_NP_002477.1:p.159E>D Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 GLU A:159 A:159 159.0 0.837 S -96.0 137.4 159.0 0.837 0.0 HOH
 3.154
 OE2
 O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 GLU A:159 A:159 152.0 0.8 S -96.3 146.7 152.0 0.8 0.0 HOH
 3.369
 CG
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 GLU A:159 NA:NA DO NA DO DO DO NA NA NA
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 GLU A:159 A:159 166.0 0.874 S -98.8 150.5 166.0 0.874 0.0 HOH
 8.781
 N
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 GLU A:159 A5:159 94.0 NA S -96.0 137.3 94.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 GLU A:141 A:159 168.0 0.884 S -102.4 146.3 168.0 0.884 0.0
GLU C:141 C:159 168.0 0.884 S -101.5 147.2 NA NA NA
GLU F:141 F:159 167.0 0.879 S -101.3 146.6 NA NA NA
GLU H:141 I:159 169.0 0.889 S -101.1 145.5 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 GLU A:140 C:159 161.0 0.847 S -105.8 143.9 161.0 0.847 0.0 HOH
 6.479
 O
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 GLU A:141 A:159 163.0 0.858 S -111.5 161.6 163.0 0.858 0.0
GLU C:141 D:159 163.0 0.858 S -111.8 161.8 NA NA NA
GLU E:141 G:159 166.0 0.874 S -111.8 161.4 NA NA NA
GLU G:141 J:159 164.0 0.863 S -111.7 161.4 NA NA NA
GLU I:141 M:159 163.0 0.858 S -111.9 161.8 NA NA NA
GLU K:141 P:159 165.0 0.868 S -111.8 161.5 NA NA NA
GLU M:141 S:159 164.0 0.863 S -111.7 161.3 NA NA NA
GLU O:141 V:159 162.0 0.853 S -111.6 161.6 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 GLU A:137 C:159 160.0 0.842 S -112.5 149.2 160.0 0.842 0.0 HOH
 5.993
 O
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 GLU A:140 A:159 162.0 0.853 S -105.3 141.9 162.0 0.853 0.0 HOH
 5.322
 CG
 O
GLU B:140 B:159 173.0 0.911 T -86.1 140.1 NA NA NA
GLU C:140 C:159 167.0 0.879 S -109.0 142.3 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 GLU A:140 C:159 160.0 0.842 S -102.6 152.5 160.0 0.842 0.0 HOH
 3.722
 C
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 GLU A:140 A:159 179.0 0.942 S -102.2 151.1 179.0 0.942 0.0 HOH
 3.384
 CA
 O
GLU B:140 B:159 171.0 0.9 S -95.9 144.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 GLU A:159 A:159 164.0 0.863 S -79.7 153.3