Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 100409800 . T A CCDS6728.1:NM_002486.4:c.638aTg>aAg_NP_002477.1:p.213M>K Homo sapiens nuclear cap binding protein subunit 1 (NCBP1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1n52 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 MET A:213 A:213 0.0 0.0 H -83.1 -17.5 0.0 0.0 0.0 GOL
HOH
 7.389
3.589
 SD
CA
 O3
O
1n54 1 Q09161 100.0 0.0 X-RAY
 2003-02-18 MET A:213 A:213 0.0 0.0 H -70.7 -14.8 0.0 0.0 0.0 HOH
 4.386
 N
 O
3fex 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 MET A:213 A:213 0.0 0.0 H -90.9 -30.0 0.0 0.0 0.0
3fey 1 Q09161 100.0 0.0 X-RAY
 2009-08-11 MET A:213 A:213 0.0 0.0 H -75.5 -21.8 0.0 0.0 0.0 HOH
 6.077
 O
 O
7abg 1 Q09161 100.0 0.0 EM
 2020-12-23 MET A:213 A5:213 62.0 NA H -83.1 -17.6 62.0 NA NA
5oob 1 Q09161 100.0 0.0 X-RAY
 2017-11-15 MET A:195 A:213 0.0 0.0 H -79.2 -21.3 0.0 0.0 0.0
MET C:195 C:213 0.0 0.0 H -79.1 -21.1 NA NA NA
MET F:195 F:213 0.0 0.0 H -78.9 -21.7 NA NA NA
MET H:195 I:213 0.0 0.0 H -79.0 -21.3 NA NA NA
1h2v 1 Q09161 99.87 0.0 X-RAY
 2002-10-17 MET A:194 C:213 0.0 0.0 H -80.7 -11.7 0.0 0.0 0.0 HOH
 3.850
 CA
 O
5oo6 1 Q09161 99.87 0.0 X-RAY
 2017-11-15 MET A:195 A:213 0.0 0.0 H -79.0 -29.8 0.0 0.0 0.0
MET C:195 D:213 0.0 0.0 H -78.6 -30.0 NA NA NA
MET E:195 G:213 0.0 0.0 H -78.8 -29.4 NA NA NA
MET G:195 J:213 0.0 0.0 H -78.5 -30.0 NA NA NA
MET I:195 M:213 0.0 0.0 H -78.7 -30.0 NA NA NA
MET K:195 P:213 0.0 0.0 H -78.8 -29.6 NA NA NA
MET M:195 S:213 0.0 0.0 H -78.4 -30.1 NA NA NA
MET O:195 V:213 0.0 0.0 H -78.8 -29.8 NA NA NA
6d0y 1 Q09161 99.87 0.0 X-RAY
 2018-04-25 MET A:191 C:213 0.0 0.0 H -66.6 -18.2 0.0 0.0 0.0 HOH
 4.391
 HA
 O
1h6k 1 Q09161 98.05 0.0 X-RAY
 2001-09-13 MET A:194 A:213 0.0 0.0 H -76.5 -11.2 0.0 0.0 0.0 HOH
 3.560
 C
 O
MET B:194 B:213 0.0 0.0 H -82.8 -10.7 NA NA NA
MET C:194 C:213 0.0 0.0 H -81.9 -15.3 NA NA NA
1h2t 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 MET A:194 C:213 0.0 0.0 H -83.9 -15.2 0.0 0.0 0.0 HOH
 3.408
 O
 O
1h2u 1 Q09161 93.51 0.0 X-RAY
 2002-10-17 MET A:194 A:213 0.0 0.0 H -83.9 -13.4 0.0 0.0 0.0 HOH
 4.480
 CA
 O
MET B:194 B:213 0.0 0.0 H -89.0 -16.1 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q09161-f1 1 Q09161 100.0 0.0 MET A:213 A:213 0.0 0.0 H -78.7 -19.6